YALI0F05566g

Overview

Description similar to uniprot|P16370 Saccharomyces cerevisiae YIL021w RPB3 DNA-directed RNA-polymerase II
Locus type CDS
Locus tag YALI0F05566g

Location

Species Yarrowia lipolytica Positions 829223..831591
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 2369 (nuc.)
Previous locus YALI0F05544g Next locus YALI0F05588g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F05566g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F05566gYALI0F05566g_mRNA-001YALI0F05566g_CDS-001

Nucleotide sequence

 

>YALI0F05566g
ATGGAAGAGGAAACGGGCCCCAAGGTGACCGTGCGAAAGATCGAGCCGGATTCGGTCGAT
CTGGTGCTTCAGAATGTCGATTTAGCGTGAGTATTACGAGGGCCACACGGCCTCTCGGCG
GATGTTCGACGATGGATTGAGAGAGGAGAGAATCGTGTTGTGGGGAGATTGTGCGGGAGA
CACAGACGTGATACGTTGTGAGGGGTATCAAGAGACACAGACATGATGTCATGTGATGGG
AGCGATGTGTGAAGGGGATTCGATGAGGTGGCAAGATGAGATGGTGAAGGAGAAGGTGGC
AACTTGATGGATGCCAACTTGATTGGTGGAGTGATTTGCTGCTGAATGAATGTGACTTTC
GAGACTAAGGTGTCATTTGGTGACTGTCAAACAAGCAATGGGAGGACGATGTCTACGGTC
TGATTCTTGGCCTGGGCCTGGTTCTGATCCTCGTTCTTGTTCTGTTCGGATGATATGTTA
ATGTTACTCTAAAGATGACCATGAGTTCAGTTGGAATCATTCTTCACACTACCCCCTCGA
AACTACTGCTTCAGTGTCGATACCATATGTCAGGCGGGGTCTCCTTAGACATAGACTGCG
GTACGTCGGGAGAGCGTGGAGACTGCCATCACGCGCTCTATCAGACGAAGTATTCCCAGG
CATATCAGACTCACGCGCTACCCGAGGATATCTTCGTGTAAGCCATTCAACAGATACATT
CCACAGATACATTCCACAGATACATCCAACAGATACATCCAACAAACTCAATCCAACTTT
TCTTACATTTAACGGGTCCTCCCACTCTCACCTAGATCTGATGCCGTTTAATGCGAGCCA
GACTCACCATGACCTCTACCTGACGCCCAGGTATATATACTGAAGTTGCTCCTGGGTTAC
CACGGCTCATCATCTGACTTTGTTTTGCTGAAGTTCAGCTGAACCCGTCTTTCCATCAGG
CGTCACTGTTTAGGTAGTTTGGACCCAAGACTGTCTTTCCACTCGCTGAAATCGAGAGAC
TGCCTCGTCTTACGTGTTTTTGCCTGAAATGACAGGTTTTGTCGGTCTCTGGAATCTAGT
GTTGTTTCAATGGGATGATATCATCACGTCTTCTGCTTCGCTCAAGGAGAAAACTTCCTG
TCTGCCTAGGAATCACGTCCGTCTCTGAGTCTCCTCACTGGCTCTCACTGCTCGAAGCGC
AAGTGTTCACTCTTACTAACCCAGCCTTGCCAACTCTCTCCGACGAGTCATGCTGGCCGA
GATTCCCACGCTCGCCATCGACCTGGTCGAAATTTCCACAAACACCTCCGTGCTCGCTGA
CGAGTTCATTTCACACCGTCTGGGTCTCATTCCGCTGGACTCCCAGGACGTGAACGATCT
CGAGTACAGTCGAGACTGTGTTTGTGACGAGTATTGCGACAAGTGCTCCGTTGTGCTCAT
GCTGGACGCCACGTGCACTGGCGACGACACCATGGACATCTACTCCCGTGATCTCATGGT
GCACACTACCCCCGAGCGGCCCGAGCTCGGCAAGCCCATCTACACGGACCCGGCCAAGAA
GGGCATTCTCATCTGCAAGCTGCGTAAGAACCAGAGTCTGCGCATCAAGTGCATTGCCAA
AAAGGGCATTGCCAAGGAGCACGCCAAGTGGAGTCCCTGTGCGGCCATTGGCTTCGAGTA
CGACCCCTGGAACAAGCTCAAACACACCGACTACTGGTACGAGGAGAATGCCGAGGAGGA
GTGGCCTCTGAGTAAGAATGCAGACTGGGAAGAGCCTCCCAAGGAGAACGAGCCGTTTGA
CTACAATGCCAAGCCCAACAAGTTTTACATCAACGTGGAGGCTACCGGCGCCCTGACGCA
GTACGAGGTGGTGCTGCGAGGCATGCAGGTGCTGCAGAAGAAGCTGGCTGAGGTGGTGAT
GATTCTGGGCGATAGGGACGGCGCCGGTGGTGCTGCAGGCCGAAACGGAGGCCAGACTCA
ATATGGAAATGAGACCCAGTACGGAGGAGGAACCCAGTACGGAGATACTCAGTATGGAGG
ACCTACGTTTGGAGGTAATGACGAGGGATTCAAGTCCGAGTATGGGACCAATGGAGGGTG
GTATTAGAGGAGGGAATATGAGGACCTAGTCCCTTTTTTGCCGATCCAGGACAGATATCC
TGGAGAAGTTTCGAGTGGGAGAAGTCATTTCAGTGAAGAGTCGAGCCCCCCACCATGGCA
AACTCCGACGAGGAGATGGATAGCATAGCTGGAAGTGTGGACCCAATCTATCTCAGGTAC
AAATGTCTGGGTCGACTGAGTACTCGTACAAATATTGGAGGAATGTGTAACTATAGGAAA
ATTAATTATTACAAGAATGCGATGTTTGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F05566g_CDS-001

Protein length: 323 aa.
Product: RNA polymerase II third largest subunit B44, putative

>YALI0F05566g_CDS-001 MEEETGPKVTVRKIEPDSVDLVLQNVDLALANSLRRVMLAEIPTLAIDLVEISTNTSVLA
DEFISHRLGLIPLDSQDVNDLEYSRDCVCDEYCDKCSVVLMLDATCTGDDTMDIYSRDLM
VHTTPERPELGKPIYTDPAKKGILICKLRKNQSLRIKCIAKKGIAKEHAKWSPCAAIGFE
YDPWNKLKHTDYWYEENAEEEWPLSKNADWEEPPKENEPFDYNAKPNKFYINVEATGALT
QYEVVLRGMQVLQKKLAEVVMILGDRDGAGGAAGRNGGQTQYGNETQYGGGTQYGDTQYG
GPTFGGNDEGFKSEYGTNGGWY*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG