YALI0F05038g - PDB2

Overview

Description uniprot|Q6C2U7 Yarrowia lipolytica YALI0F05038g PDB2 3-methyl-2-oxobutanoate dehydrogenase (Lipoamide) E1 beta chain
Locus type CDS
Gene name PDB2
Locus tag YALI0F05038g

Location

Species Yarrowia lipolytica Positions 761634..763004
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1371 (nuc.)
Previous locus YALI0F05016g Next locus YALI0F05060g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F05038g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F05038gYALI0F05038g_mRNA-001YALI0F05038g_CDS-001

Nucleotide sequence

 

>YALI0F05038g
ATGCTTACAAGACTGCGACCTGTTTTGAGGGGTGGCGTGAAAGCGTCGTTGCCCTCGCTG
ACAAAGACCGTGTCACCTCTTCGTGGCTACTCCTCCCTGGTGGCCTCTCACGACTCCCCC
AACCTGGTGAACCTCTCTGAAGCCCCCTTTCTGCTCAACTCCGCCAACGCCGCCCTGTCT
CATCCAGAACTGGCAGGCACAGCTGCGGCCGAGGGCCAGGCCAAGCAGCTCAACCTGTAC
CAGAGTGTGAACGACGCTCTGAAAACGGCGCTGGAGACAGACGAAACTGCCGTGCTGTTT
GGAGAAGACGTGGCCTTTGGAGGCGTGTTCCGGTGCTCCATGGATCTCCAGGAGCGATTT
GGAGCAGACCGGGTCTTCAATACCCCCTTGACCGAACAGGGACTCGTGGGATTCGGTATT
GGATACGCTGCCTATGGATCCACAGCGATCGCTGAGGTCCAGTTTGCAGATTACGTGTTC
CCCGCATTTGACCAGATTGTCAACGAGGCTGCCAAGTACCGTGCTCGGTCGTCGTCCAAC
TTTGACGCCGGAGGACTCACCATCCGAATGCCCTGTGGAGTAGTTGGCCATGGCGCCATG
TACCACTCTCAGTCCGGAGAGGCCTTTTTCAGCCACTCTCCAGGCATCAAGGTGGTCATG
CCCCGTTCGCCCTTCCAGGCCAAGGGTCTGCTGCTGGCTTCCATTCGATCCAAGGACCCC
ATCATCTTCATGGAGCCCAAAATCCTGTACCGAGCATCCGCCGAGTACGTGCCCACCGAG
GACTATGAGTTGCCCATTGGCAAGGCAGACGTGATGCAGGAGGGCAGTGACGTGACCATT
GTTGGATACGGCACGCAGCTGTACCATATTCATGCTGCTGCCAAGATGGCCGAACAGAAG
CTCGGTGCGTCTGTGGAGATCATTGACCTGCGGACCATTTCGCCTTGGGACCGTGACACA
GTGTTTGAGTCTGTCAAGAAGACGGGCCGGTGTGTGGTGACCCACGAGGCGCCTCGAACC
GGTGGAATTGGCGCGGAGGTGGCCGCCGAAGTCCAGGAAAAGTGTTTCCTGCATCTCGAG
TCGCCCGTCCAACGAGTCACTGGCTGGGACACTCACATGTCGCTTGCATTTGAAGATCTC
CAGGTCCCCAACGTGACCCGAATCTTCCACTCCATCAAAAAGGCCATTGAGTATTAGTCT
CGGCATAGGTGGAAGTATATAGTATAGATGGAGGTTACTTTTCAAGGCTTGTGTAGTGCG
TGGAGAGTGTGTAGATGTTCTTACTCGTGGAGATGAACTCCAGGTCTCGGTCGTCAGTGT
AAGTACAAGTACAATACATGTACCAGTAAAGCACAGGTACAGTAATCACTT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F05038g_CDS-001

Protein length: 399 aa.
Product: 3-methyl-2-oxobutanoate dehydrogenase (Lipoamide) E1 beta chain
Gene: PDB2

>YALI0F05038g_CDS-001 MLTRLRPVLRGGVKASLPSLTKTVSPLRGYSSLVASHDSPNLVNLSEAPFLLNSANAALS
HPELAGTAAAEGQAKQLNLYQSVNDALKTALETDETAVLFGEDVAFGGVFRCSMDLQERF
GADRVFNTPLTEQGLVGFGIGYAAYGSTAIAEVQFADYVFPAFDQIVNEAAKYRARSSSN
FDAGGLTIRMPCGVVGHGAMYHSQSGEAFFSHSPGIKVVMPRSPFQAKGLLLASIRSKDP
IIFMEPKILYRASAEYVPTEDYELPIGKADVMQEGSDVTIVGYGTQLYHIHAAAKMAEQK
LGASVEIIDLRTISPWDRDTVFESVKKTGRCVVTHEAPRTGGIGAEVAAEVQEKCFLHLE
SPVQRVTGWDTHMSLAFEDLQVPNVTRIFHSIKKAIEY*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG