YALI0F03971g

Overview

Description weakly similar to uniprot|E6R8B3 Cryptococcus gattii nuclear mRNA splicing, via spliceosome-related protein
Locus type CDS
Locus tag YALI0F03971g

Location

Species Yarrowia lipolytica Positions 595748..596647
Strain CLIB 122 Strand Sense
Chromosome YALI0F Total length 900 (nuc.)
Previous locus YALI0F03949g Next locus YALI0F03993g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F03971g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F03971gYALI0F03971g_mRNA-001YALI0F03971g_CDS-001

Nucleotide sequence

 

>YALI0F03971g
ATGATCACGTGCGTACAACACAACCACTCGGGAACACATCTGCTGTCAGGAACCTCAGCA
GGAACGGTCCAACTGTGGAACGCCGAGACCCACAAACACGTGACCACGTTCGCCCAGGAA
CATGCGGTCTCACGTGATCTGCGGGCGATTGCGATCTCCCGTGACGGCGAGATTTTCGCG
TCTGGTGGCGACGACAGACACGTGATTGTGTGGGACACGGCGCGCGGCAGCCTCGTTAGC
CGGCTTTCCGACCACCTGGGCCATGTGACTGACGTCAGCATTCCCGGGTGGTCACGTGAC
CTGCTGTTTTCGGCGTCGCACGACGGCACGGCCAAGTGTTGGGATTTGCGGGCGCGGAGC
AGCCGGGCTCCGATCCAGTCGTTCAAGTCACGTGGTGCCATCAACGGCGTTGCGTCGCCC
GCCGCCGGGTATGTGGTCACATGTTCTTCCGACGGAAGTATGTCTGTTTACGATGTTCGG
GCCGGTGAGCAGGCTGTTACTACGGTTACCGGGGATGTTGTCTCCGGCATGACGGTTTCT
CTGTCTTCGCCGTTCATTGTAGGGTTGGGTTCACGTAATGTGTTTCTCTGCGATCTCGGG
ACTGGTCTTGAGTTGGAGCGGAGGGTTTGTGGGTCTGCAACTTCTGGGATCAGTTTTTTT
GACAACGATTCAAAGGTGGTAGTTTCTGCGGGACACGACTTGTTTTGGTATCAAGTTGGG
GGGGAAAAGAGTGGTCGGAGGAGTTTGGGGGGGAAAGTTGGCTCATTTTCGGTCGATAAC
AGGAAGGGGACCAAAGAACTTGCTGTTGTGGTTGGGGGGGAGTTGGAGTGGATCAGGGTG
GACGGAAGCGAGGGCCCAGGCGGAAGCGAGGGGCCGGAGGTGTCGAGTGGACAACCCTGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F03971g_CDS-001

Protein length: 300 aa.
Product: Conserved hypothetical protein

>YALI0F03971g_CDS-001 MITCVQHNHSGTHLLSGTSAGTVQLWNAETHKHVTTFAQEHAVSRDLRAIAISRDGEIFA
SGGDDRHVIVWDTARGSLVSRLSDHLGHVTDVSIPGWSRDLLFSASHDGTAKCWDLRARS
SRAPIQSFKSRGAINGVASPAAGYVVTCSSDGSMSVYDVRAGEQAVTTVTGDVVSGMTVS
LSSPFIVGLGSRNVFLCDLGTGLELERRVCGSATSGISFFDNDSKVVVSAGHDLFWYQVG
GEKSGRRSLGGKVGSFSVDNRKGTKELAVVVGGELEWIRVDGSEGPGGSEGPEVSSGQP*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG