YALI0F03839g - SRP54

Overview

Description uniprot|Q99150 Yarrowia lipolytica YALI0F03839g SRP54 Signal recognition particle 54 kDa protein
Locus type CDS
Gene name SRP54
Locus tag YALI0F03839g

Location

Species Yarrowia lipolytica Positions 564219..566021
Strain CLIB 122 Strand Antisense
Chromosome YALI0F Total length 1803 (nuc.)
Previous locus YALI0F03817g Next locus YALI0F03861g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0F03839g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0F03839gYALI0F03839g_mRNA-001YALI0F03839g_CDS-001

Nucleotide sequence

 

>YALI0F03839g
ATGGTTCTTGAAGACCTCGGAAAACGAATCAACGGCGCGTTTGCCAACCTGTCGAAGGGC
GGCGATATTGACGAGGCGCTGGATGCGATGCTCAAGGAGGTATGTTCGGCTCTTCTAGAG
TCCGATGTGAACATCAAGCTGGTTTCACAGCTTCGACAAAAGGTCAAGAACAGTGTTAAG
GCGACGCCCAACGGTGCCTCCAAGAAGAAGGTGATCCAAAAGGCGTTGTTTGACGAGCTG
GTCAATCTGGTTGGGGTGGACGAGAGCGCTGCTTCTGCCGCCAAGTTCAAGCCGCAGAAG
GGCAAGTCCAATGTGGTCATGTTTGTGGGTCTGCAGGGATCCGGAAAGACCACGTCATGT
ACCAAGCTGGCTGTCTACTACCAGCGGCGAGGCTTCAAGGTGGGATTGGTGTGTGCCGAT
ACCTTCCGAGCTGGAGCGTTTGACCAGCTCAAACAGAACGCCACCAAGGCCAAGATCCCC
TTCTTTGGCTCGTACACAGAAACAGACCCCGTGGCGGTGGCAGCCGAGGGAGTAGCCAAG
TTCAAGAAGGAGAAGTTTGAAATCATCATCGTCGACACCTCCGGACGACATCGACAGGAA
AGCGAACTGTTTACGGAAATGGTGGATATTGGCGCTGCTGTGAAACCGGACTCGACAATC
ATGGTGCTCGACGCCTCCATTGGCCAGGCCGCCGAGCCCCAGTCACGTGCCTTCAAGGAC
GCCTCCGACTTTGGTTCCATCATCCTCACCAAGATGGACGGACACGCCAAGGGTGGAGGA
GCTATTTCTGCGGTGGCAGCCACAAACACCCCCATCATTTTCATTGGTACCGGAGAGCAC
ATTCACGATCTCGAGGCGTTTTCGCCCAAGCAGTTCATTTCCAAGCTGCTCGGTATCGGC
GACCTCCAAGGTCTCATGGAGACGATGCAGAGTCTGAATCTCGACCAGAAGAAAACCATG
GAGCACATTCAGGAGGGTATTTTCACACTGGCGGATCTCAGAGACCAGATGGGCAACATG
CTCAAGATGGGATCGTTGTCCTCCATTGCTGGCATGATTCCGGGACTCTCGGGCATGGCG
TCTTCCATTTCCGACGAAGAGGGTACCCGTCGAATCAAGCGAATGATCTACATTCTCGAC
TCTATGAACCAGAAGGAGCTGGATTCGGATGGATCCATTTTCAAGGAGGTGCCTTCTCGT
ATCACACGAGTTGCCCGGGGCTCGGGAACCTCCATCCGGGAAGTCGAGGAGGTGCTTCAG
CAGCAGAAGATGATGGCCTCCATGGCGTCGCGAATGGGCGGCAAGAACGGCATGATGTCA
CGAATGCAGAACGCCCAGAACAACCCTGCCCAGATGGCTGCAGCTCAAAGACGGGCCCAG
CAGATGATGGGCGGAGGAGCCGGAGGAATGCCCGGCATGGGAGGAATGCCTGGAATGGGC
GGTATGCCCGGAATGGGTGGAATGCCCGGTATGGGAGGTGGTATGCCTGACATGAGTGCT
CTGCAGGGCATGTTCCCTGGAGGAATGCCTGACATGGGCCAGATGATGAACATGGTACAG
AACAATCCTCAGATGAAGGCCATGGCGAGAAGTATGGGTCTCGGCATCTAAGCAAAGAGC
CTAGACGGCCAAGACGAGTAACGAGTCTTGGTGAGCTAGCACGAGGAGCGCAGCGCTGTC
TTTGGGCAATGTGCCCCACTGTGTGAGACAGTCTTTTGTTTCCTCCCTGCTAGAGAAATC
TGTGAAGAGGAACTCACAGAGCATTAATATTGTGTATAGTTGAATTATTTGGATTGGATG
GGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0F03839g_CDS-001

Protein length: 537 aa.
Product: Signal recognition particle 54 kDa protein
Gene: SRP54

>YALI0F03839g_CDS-001 MVLEDLGKRINGAFANLSKGGDIDEALDAMLKEVCSALLESDVNIKLVSQLRQKVKNSVK
ATPNGASKKKVIQKALFDELVNLVGVDESAASAAKFKPQKGKSNVVMFVGLQGSGKTTSC
TKLAVYYQRRGFKVGLVCADTFRAGAFDQLKQNATKAKIPFFGSYTETDPVAVAAEGVAK
FKKEKFEIIIVDTSGRHRQESELFTEMVDIGAAVKPDSTIMVLDASIGQAAEPQSRAFKD
ASDFGSIILTKMDGHAKGGGAISAVAATNTPIIFIGTGEHIHDLEAFSPKQFISKLLGIG
DLQGLMETMQSLNLDQKKTMEHIQEGIFTLADLRDQMGNMLKMGSLSSIAGMIPGLSGMA
SSISDEEGTRRIKRMIYILDSMNQKELDSDGSIFKEVPSRITRVARGSGTSIREVEEVLQ
QQKMMASMASRMGGKNGMMSRMQNAQNNPAQMAAAQRRAQQMMGGGAGGMPGMGGMPGMG
GMPGMGGMPGMGGGMPDMSALQGMFPGGMPDMGQMMNMVQNNPQMKAMARSMGLGI*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG