YALI0E35090g

Overview

Description some similarities with uniprot|Q12303 Saccharomyces cerevisiae YLR121c YPS3 GPI-anchored aspartyl protease 3 (yapsin 3), pseudogene
Locus type CDS
Locus tag YALI0E35090g
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 4191923..4193207
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1285 (nuc.)
Previous locus YALI0E35046g Next locus YALI0E35112g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E35090g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E35090gYALI0E35090g_mRNA-001YALI0E35090g_CDS-001

Nucleotide sequence

 

>YALI0E35090g
TGGCAACATGTCAGTGATCGATCGTCCCTTTGTGCATGCTTTACTACCCACATCTGGGGT
GGTATCGGAAACTTTGGTACAGATACTGTCTCCTAAGCAGGACAGACTCTCAATGACTTC
CAGGTCTGGGTTTCAAAGGACAGAATAATGGGCGCCATTGGTATCTTTGGCCAGTCTGGC
TATGATGACCCCACCAGCTCTGTTGTTCAGGGTCTTGCCGACTCTGGAAAGATATCCCGG
GCTATCTACTCTCTCAAAGCTGAGAAGCCTATTTGGTGGCGGAGCAAGGCTACCGAGGGT
GTTACCAACAACGTCTACTACGGAGGTTTTGACCGAGCCAAGTATGAGGGCCCCCTGACC
ACCATCAAATGTGGACATCATGGAGGTTACGCCATGCCTCTTGGTGGTCTATCCATCAAG
GGAGAGAAGGTCCATACCGCGCGAGACCACCAGAATGTTCTGGACACTGGAGGGGTCGCT
CTCATGCTGCCAGACAGCACCCTCAAGACCCTCTCCGAGAAAAGAGGTGGTAGTGGTGTC
TGGGAGTCCCCAGGCTACTTCAAAATTGAGTGTGGCTCCAAGCCTGAGATCACCTACGAG
TTCGGATACACAACGATTGATGTCGACTTGTCTACCTATGTTCGTGCCTCTCCCTACGGA
GGCTGACGATTAAAGTGTGTCAACAATGCTGACGACAACACAGATTCTGCTTAACGGTCC
CTCTCTTATCTCCAAGGCTCTGGTGATTTACGATAACACCCGAGATACCATCACCATCGT
TAAGGCCAAATACACCGACGAGTCTGATGTTGTTGAAATTACTGGTGACATTCCTGGTAC
CGTCAAGTATGAGGACTGGGTCGCTGGAAAGCCTCTTGCTGTTGCCTCTTCTGCTCCTGC
CTCTTCTAAGACTTCAACCATCCTAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGC
TCCCAAGAGCTCTTCTGTTGCCCCTCCTTCTTCTTCTGCAGCTCCTCAGAGCTCTTCTGT
GGTCCTCAAGCCCTCTTCTGCAGCCCCCACTACCTCCAAGGCTGCTCCTCAGAGCTCCAC
TCTGGTTGTCAAGACCACTTCTATCCAGCCCGAGCCTCAGCTCTCTCCTACTCAGGCCGA
GCCCTCTCCTACCCAGCAACAGTGGTGCTCTTGGTTCGGCACCTTCTGTATCTCTTTTGA
CTCTTACGAAGCCACTTCATTTATTTTTTTGCTTCTATCTTCAAATATATTATATATTAT
CTTCAACCAATTCCAAGTAAAATAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E35090g_CDS-001

Protein length: 428 aa.
Product: Conserved hypothetical protein

>YALI0E35090g_CDS-001 WQHVSDRSSLCACFTTHIWGGIGNFGTDTVS*AGQTLNDFQVWVSKDRIMGAIGIFGQSG
YDDPTSSVVQGLADSGKISRAIYSLKAEKPIWWRSKATEGVTNNVYYGGFDRAKYEGPLT
TIKCGHHGGYAMPLGGLSIKGEKVHTARDHQNVLDTGGVALMLPDSTLKTLSEKRGGSGV
WESPGYFKIECGSKPEITYEFGYTTIDVDLSTYVRASPYGG*RLKCVNNADDKQILLNGP
SLISKALVIYDNTRDTITIVKAKYTDESDVVEITGDIPGTVKYEDWVAGKPLAVASSAPA
SSKTSTILASSSSSSSSSVAPKSSSVAPPSSSAAPQSSSVVLKPSSAAPTTSKAAPQSST
LVVKTTSIQPEPQLSPTQAEPSPTQQQWCSWFGTFCISFDSYEATSFIFLLLSSNILYII
FNQFQVK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG