YALI0E33378t - Ylli_pol

Overview

Description Ylli relics, ENA|AJ319752 Yarrowia lipolytica LINE retrotransposon Ylli
Locus type mobile_element
Gene name Ylli_pol
Locus tag YALI0E33378t
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 3955180..3955848
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 669 (nuc.)
Previous locus YALI0E33363g Next locus YALI0E33377g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E33378t oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E33378tYALI0E33378t_mRNA-001YALI0E33378t_CDS-001

Nucleotide sequence

 

>YALI0E33378t
TTTGTGTGTCACTGCGTGTCTGACGCGTCACGTCGACACGGTTAAGGTGGCGTTGCTTCA
GATCTGGTGGGTTTCACAGAAGTCACCGTGAGAACATATGGGATCTGGAAGATGGAGAGA
TCCCTCCGGTACTCAGGGGACGACGCCACCCTGGGACATGTCCAACAGGATTTGCTTCAA
TTCCTGAAGGAAGCCCAGATGTGTTTCTACGATGGACAACCGCCAGCACTTCACGATGAG
AGAGAGTAGCGACAGTAGCAAGCGTAAAAGGCGGCCGAGGCCACCGAGAGAACAGCGTAG
CAGGGCGCGTAGTCACCACAGGGGACGCAGAACCAAACCAATGACGAAGAAGAACCACAA
GGAGACATTTTCAAAGGCAATGCAAACGAAGAGGGCAATGGAAGGATTGAGATTAGAGAA
CTGGAGACTGGAGTGGCGTTTTCCCGATGAACGAACAAACACGCGAAGCTATGTGGACCA
ACATACAACACGGACTGAACCAGGTTTTTTTATGATTTTTTTACTGGAAATAGGTACGTG
CCAAGTTGGACCATGACACTAAACGTGTTTAATTAGTAATATTCGTGTAAGCGTACATTC
ATTTCAAAGGTTATTCTTTCACAGCAAAGTTATAATTAAATGAATGTATATGCAGAAAAA
AAAAAAAAA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E33378t_CDS-001

Protein length: 83 aa.
Gene: Ylli_pol

>YALI0E33378t_CDS-001 FVCHCVSDASRRHG*GGVASDLVGFTEVTVRTYGIWKMERSLRYSGDDATLGHVQQDLLQ
FLKEAQMCFYDGQPPALHDERE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG