YALI0E32542g

Overview

Description similar to uniprot|P43621 Saccharomyces cerevisiae YFR051c RET2 coatomer complex delta chain
Locus type CDS
Locus tag YALI0E32542g

Location

Species Yarrowia lipolytica Positions 3863915..3865663
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1749 (nuc.)
Previous locus YALI0E32527g Next locus YALI0E32571g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E32542g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E32542gYALI0E32542g_mRNA-001YALI0E32542g_CDS-001

Nucleotide sequence

 

>YALI0E32542g
ATGGTAAGCAATTGGACGGATCCGAATCGCTCGCGCATATACTAACACAGGTCGTTTTAG
CCGCATCCATATGCTCACGTGGCGGCAAAGCCATCATCTCGCGTCAATTCCGAGATCTGC
CCAAAGAGAAGGTCGCCGGACTGCTGGCCATCTTCCCCAAGCTCATCCAGGGCTCCAAAC
AACACACAACCGTGGAGCACGACAATGTTCGATACGTTTACCAGCCACTGGAGGAGCTGT
ACGTGGTTTTGATCACCAACCGTCAGTCCAACATTCTGCAGGACATTGAGACTCTGAGAC
TGCTAGTCCAGGTGGTCACTTCGTTGGTACGTGTCGTGGATGAGCGGGAGATTCTGCTGG
CCGCATTCGACCTGCTCGGCGCCTTTGACGAGGTGGTGTCCCAGGGCTACCGGGAAAACC
TGTCTCTGCAGCAGATCCAGACGTTTTTGGAAATGGAGTCCCACGAGGAGAAGATTCAGG
AAATCATTGAGCGAAACAAGGAGCTGGAGGCCACCGAAGATCGAAAGCGAAAGGCCAAGC
AGCTGGAGATGCAGCGAAAGGAGGCTGCCAAGCGAGGTCTGCCCGGAAACGCTGGAGGTC
ATGGATCTTTCCAGGCCCCCGCCTTCCAGGCCCCCGCTCCTTCGTTTGTGCAACCCGCTG
CTGCTCCCGCACCTATCCCCGAGACAACCCACAAGCCCCGTGCTCCTCGAGGAAAGGGCA
TGCAGCTCGGCAAGAAGAAGGGCGGATTCGATGACAGCCCCTCTGCTTCTCTGCTGGCTA
ACGCTGACATCGCCGTGCCCACCCCCAAGTCAAAGCCGCAGCAGCAGACTGCCCCCGCAG
CAGCAGCTCCCTCTGCCTACAATCCCGAGGTCCAGGGCGTTCATCTCACTGTCGCCGAGG
TTGTCACCGCGACTCTCGGTCGAGACGGCTCTGTTAAGAGCGCTGAGGTCAAGGGAGACG
TACAGCTGAGAATCGGCAACCCCGACCACACAAAGATCCGAATCGCGCTCGAGGCTAACG
CCCCCGGCGTCAAGTACCGAACCCATCCCAACGTGGACAAGGCGCTGTTCTCCTCGCGCC
AGATCATCGGTCTCAAGGACCCCTCTCGAGGCTTCCCCTCTAACGGCGCTGCTCTCGGCG
TCCTGAGATACTCTGCTAACGCACCGGAAGAGGCTGTTCCTCTGACCTTCAACTGCTGGT
TTGCGAAGTCGGACCCCGGCTTCTACGACGTGACCCTGGAGTACGAGGTCTCTGAGGGTT
TCACCGGCAAGATGACCAACGTGTCTGTCATTGTGCCTCTGGTCTCCTCCAACGCTCACA
TCTCCGACTCCTCCATCACCTGGGACCAGTTCGACGACCATCTCGAGTGGATCATTCCTG
AGATCACTGCTGATGGTGACACCTCTACCGGTGCCTTTGAGTTCACCGCTGAGGCCGACC
AGGAGGACGAGTTCTTCCCCATGGAGGTTTCCTTCACTCTCAACGACCCTGAGACCACAG
TGGGCAACGTCAAGATTCTCAACGTCTTCTCTGCCACTGCCGAGGACGAAAACATCCCCT
ACCAAGAGGTGACCCGAGTGACGTCGGACAACTACCAGATTGTTTAAGGAGGAACAACTA
CTAGGTAGCATGTATAAGTAGGTTGTATGGAGCTGTTATTGGAACAACGAGTACAAGTAG
GTTGAGTGTAAATTGGCCGTATTACTGGAGCAATATGTGACAAAGTAGATTTGGTATCAT
GTGTTTCCT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E32542g_CDS-001

Protein length: 520 aa.
Product: Delta subunit of the coatomer complex (COPI), putative

>YALI0E32542g_CDS-001 MVVLAASICSRGGKAIISRQFRDLPKEKVAGLLAIFPKLIQGSKQHTTVEHDNVRYVYQP
LEELYVVLITNRQSNILQDIETLRLLVQVVTSLVRVVDEREILLAAFDLLGAFDEVVSQG
YRENLSLQQIQTFLEMESHEEKIQEIIERNKELEATEDRKRKAKQLEMQRKEAAKRGLPG
NAGGHGSFQAPAFQAPAPSFVQPAAAPAPIPETTHKPRAPRGKGMQLGKKKGGFDDSPSA
SLLANADIAVPTPKSKPQQQTAPAAAAPSAYNPEVQGVHLTVAEVVTATLGRDGSVKSAE
VKGDVQLRIGNPDHTKIRIALEANAPGVKYRTHPNVDKALFSSRQIIGLKDPSRGFPSNG
AALGVLRYSANAPEEAVPLTFNCWFAKSDPGFYDVTLEYEVSEGFTGKMTNVSVIVPLVS
SNAHISDSSITWDQFDDHLEWIIPEITADGDTSTGAFEFTAEADQEDEFFPMEVSFTLND
PETTVGNVKILNVFSATAEDENIPYQEVTRVTSDNYQIV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG