YALI0E30349g

Overview

Description some similarities with uniprot|Q10207 Schizosaccharomyces pombe transcriptional regulatory protein Spp41
Locus type CDS
Locus tag YALI0E30349g

Location

Species Yarrowia lipolytica Positions 3575177..3579231
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 4055 (nuc.)
Previous locus YALI0E30327g Next locus YALI0E30371g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E30349g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E30349gYALI0E30349g_mRNA-001YALI0E30349g_CDS-001

Nucleotide sequence

 

>YALI0E30349g
ATGTCCGACAAGGAAGGTGAGGTTGAGCTTCGAGCTCTGGAATCTCTGATGGAGAGTCTC
CAAGCCATGGATGGGACCGTTGAGGACAGTGAGGGAGGCGAGGAGCATCCGCCAGCCGAG
TTCGAGCCCTTTGACGAGCTTGGACATGATTGGAACCAGGTTGAACCTGCTCAGGAGTCC
CACCATGGTCCGTCTGACGCGATACAGCAACAAGAGGGAAGTGACCAGCAACAACAGCAA
CCACACAAACAACTAGAGCATCGACAACGAAAGGAAAGCCAAGATGGAGAGCAGCAGGGG
GAGATTGATCTTTCAGGTTTGCTAGCCAATGTCCAGACTTTGATGGGAGGTGGCTCCCTG
GAAGGGTTATGGAATGTAGATCATGATGAGCCCGGGCAACAGCAGCAGGAGGACCAGCCC
AAGGAAACGCCTGAGGATCCTCAAGTTCAGGAACCGAAGCCTGTTCAGGAGCAGCCCCAA
GAACCGCAGGACCGTGACGAAGATGTGACTACTCAGGAATGTGAGCCTGCTCCAGAGCAA
CAACGCGTTGACGCGTCGGAAAGCAACAATGACGATTCTGAGATGTTTTCTCTTCCTGAG
GGACTAGCGGAGCTGACGGAAACGTTGAAGGGTCTTCCTCATGAGCTTGGGGAGCAGCTG
CAGGAGTCTGAAGACACTGCTCCTGACCAGGACGCGCTGGCTGCACTCACGGAGGTTATC
AATGCTCATGCTCAACGCCAACAGGAGGCAGATACTGTTGAGGGTCAGACCCAGGAGGCT
GTCAAGGCCGATAAACCTACCAGCCCTGCTCCCGAAGCTGCTTCTGAGCCGTTCGAGACT
TCTCACAAGCAGTTTCCTGTTTCTGAGTCGCCTGAGACTGCTCCAAAGGAGCCTTCTCGA
CCTACCGAGGAGCCAACAGTTGCCCAGCCTTCGGAAGACGACATTTCATTGGCCGTCACC
GCTCTTTCTGACGCGATATCTGCCTCTAACACCCAGACTCAGACAGAACAACCTGAGGAG
GATAGGCAGGAGAAGCCAGAAGAGCCCCAATCGCAGGCTGAGGAACTTCGAAAGGATTGT
CCAGCGGATAAGGATGTTGCTCAGCAGGCTGTACCCGAACCGTCTCAGATGCAACCGGAC
GCGCAAAAGGAACGACCACAAGAGCCACAGGAGCAGCCGCGGCCTCAGAAGGAGCCCCGG
TCTGAGGAGCAGGTAGAACTACCATCGCTGGATTCACAATCACAGGATGACCACCGGTTG
TCATCTCTCGGAGGTCTTGGTGATCTTGGTGAGCTGACGGGTGGTATCGAAGCTACCCTG
GAGGCGGCTCTAGGAGCCGTCAACGACGCTGTGATGAAGCAGGGCGAGAAGGAACAAAGT
CATGAAGGACCTGAGGATATTGCACATGACACGGAACGTCCTCAGGAGCCTGAGCCGTTT
CACCAGGACTTTCAGTTCGAGGGTTCTGCTGATGATTTGGCAGAACTCCGACGAACTCTG
GAGTCTGAGGTTGCTGCTGCCACGGAAAGACAAAAACAACAGCAGCAGCAGCACCGACAG
CCTGAACCTCCTCTTGAGGAGCATATTGAGCCGTCCCTTCAAGGTGGCGTTGGTGACACC
TCCACGATTGACCCTGATCTGATGGGCCAAGGTGAGAATGACAAGGGCAAGGAGCCTGCT
GGAGCAGCCGAGTTGACTGAGGGTTTTAATCTCGACTTCGGTGACATTGAAAAGCTCATC
ACTCAAAGTCTGAACGAGAAACGGCGTGAAAGTATCAACAAGCGGAAAGAGAGTATCAGT
GACATTACCTGGCAGCAGCTTCAGCAGCATTTACACGGATTGCAGCAGGGTGAAGAGAGT
GCTGTTTACGACGACGATCTGCCTGCCCAGCAAGTTCCCCAACCCCGTCAGCGACAGACG
CAGCCTCGTTCCCGGCCCAATTTTGCTCCTAGACGTCCCCGATCTCCTCAGCCTGACCAT
GAGCAGCAGCTGAAGCAACAGATGCATCAGTTCCAGATCGAACGACCTGCTCAGTCTTCC
CAGAGCCAACAGCACCAACAGCCTGTTCAGCCGTCTCAACAGCAGATAGCCATTACTCCT
GCTCAGCATTTCCAGCAGAGCTCCTCCACCTCTTCCCAATCCCAAGTTTCTCAGCCTCAA
CCGCAGACCGAAGAAGAACCCATCAACGAGATTCTGATGAACGCTCTGGCCATGGCTATG
AACGAAGAAGGAGCAGAGGAGCCTCAACATCGACCTTTGCCTGACCAAGGACAGATTGAT
TTTACAAAGTTTGACGGTTTGGAGCCCGAAGAGAGTGCAGAAAATCTGTCTTTGGACCAA
GAGTCTTCTGCTGCACTGCTTGAAACGCTCATCTCGTCTGGTGTTAATGTGGACCAGTCC
TTTTTAGACCAGCTGTCTACTTCTGCTGGAAAGGGAGACTCTTCACAGATGTCTGTGAAC
ACTCTTCGTCAGAAGCGAGCTGCTGATTCGATGATTGAGCCCTCTGGAGCTGCTAAGCGG
TTCCGAAACAGTAACCAAAATAACAATGCTATTACTGCACAGGACGATGGTGAGGATCCC
ATTCTGGCTGCATTTCTGCTTGCCAAGCAGGTTATTTCGCAGACTCAACAGGAAGATGAT
GATGACGTCTCTCCTGATGCTATCGAGGCCATCCAGGCTGCTCTGGATAGTCTTGGGCCC
GCAGATGGGTATCCCTATAATCTGCGACGAAAGTCTCAGGGCTTTTCCGAGCAGCACCGA
GAGGAAATTCGAGAAGCCAACCGAAACAGAAAGAAGCAGTGGCGAGTCATCAATTCAGAT
CGGAACAAAGACAATGATCTGCGGTGTCGAGTGCACAAGCGAGCCAACGTCAAATTTGGA
CCAGACGACTCCGACGAAAAGTCCAAGTGGATCGACGCCGAGTACACCAAGAGACGTCGA
AAACGGTTGCAGCGTTCGGAGATGGCCGAGCGAAATCGCCAGGAGGAACAGTTCTTACCT
GGCGCTGAGCACTTGCGAACACTGTTGGAGTCGCTGGGTGAGATTGACGCATTGGAGAAC
TTCAACAATGCCATTTCGTCCCTCATCAAGGACCCCAAGCTGCTGCAAGAGGTCACGGCC
AAGGTCAACGAGGGAGGCAAGGTGCTCAACGGGTCTTTGGAGGGCATTGCTGGTCTGCTG
ACAGTTAACCTCAACGGAGGAAATGGAGCAGCTCCACGGCCTGGACTCAACACTTCTGGT
GGAGGCAAGATTCTGTCTTTCAAGCTGGATCACCACAATCATGCTCTTCCTTCAGACGTG
GCTCTCGAGGCTGCTAACAAGCCCATTTTCAACATCCATGAACCCGTGAAGGAGCCTCTC
AACCTGAACTCTATGGGACCTTCTTCCTCGTCTCAGCCCTTTCTGCCTCTTTCTCCTGTT
GTGGAGCCCGTCTTACCTCCCCCGAAGCCTAAGCCCCCGAAGCCTACAAAGAAGGTGGAA
GACATGACTATGGAGGAGCGACTGGAGTATATCATGCAGACTGATCCCGAGGACCGAGTG
GATCTTAAACAGGATGAGGTCCCCGAGGAGACTATTGTGGATCCGAAGTTCGAGAAGCAA
CTGGCTGCTATCACTGGAGATGTGGGATCTGTGAACCTGACTGGCACCAGACCACCGCCA
GTTTCTCAGGTTGCTGCTGAACATCGACCCCCGCCTTTCTGGGGCAAGACTCCCAGCACC
AACTCGCCGTCCATGGGTCATCAGGGAAGCCCTGGTCCAATGCCTGCGTCTTTTAAGTCC
CACCTTCTGGGAGGGGACAGGGACACCCCGATCATCAAGCCACCACAGTACAGCGTTCCT
TCCAAGCCCAGAGCTGGTGGAGTTGCCGGTGCTTTTGCTTCTCGAATCGAGGACAAGAAG
GCTGCTTCTTTGGGCTTCCCACCACTATTGGCAGCTTTCAGAGACAAGATGGAGTAATGA
GGGCAAGGGGGAGGAAACAATTAGATGTCGAGACTTTTGGGAGGTTATTTATGCGACACC
GAGTGTCTTATTTATTAATGTATTATTTTTTATTT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E30349g_CDS-001

Protein length: 1319 aa.
Product: Conserved hypothetical protein

>YALI0E30349g_CDS-001 MSDKEGEVELRALESLMESLQAMDGTVEDSEGGEEHPPAEFEPFDELGHDWNQVEPAQES
HHGPSDAIQQQEGSDQQQQQPHKQLEHRQRKESQDGEQQGEIDLSGLLANVQTLMGGGSL
EGLWNVDHDEPGQQQQEDQPKETPEDPQVQEPKPVQEQPQEPQDRDEDVTTQECEPAPEQ
QRVDASESNNDDSEMFSLPEGLAELTETLKGLPHELGEQLQESEDTAPDQDALAALTEVI
NAHAQRQQEADTVEGQTQEAVKADKPTSPAPEAASEPFETSHKQFPVSESPETAPKEPSR
PTEEPTVAQPSEDDISLAVTALSDAISASNTQTQTEQPEEDRQEKPEEPQSQAEELRKDC
PADKDVAQQAVPEPSQMQPDAQKERPQEPQEQPRPQKEPRSEEQVELPSLDSQSQDDHRL
SSLGGLGDLGELTGGIEATLEAALGAVNDAVMKQGEKEQSHEGPEDIAHDTERPQEPEPF
HQDFQFEGSADDLAELRRTLESEVAAATERQKQQQQQHRQPEPPLEEHIEPSLQGGVGDT
STIDPDLMGQGENDKGKEPAGAAELTEGFNLDFGDIEKLITQSLNEKRRESINKRKESIS
DITWQQLQQHLHGLQQGEESAVYDDDLPAQQVPQPRQRQTQPRSRPNFAPRRPRSPQPDH
EQQLKQQMHQFQIERPAQSSQSQQHQQPVQPSQQQIAITPAQHFQQSSSTSSQSQVSQPQ
PQTEEEPINEILMNALAMAMNEEGAEEPQHRPLPDQGQIDFTKFDGLEPEESAENLSLDQ
ESSAALLETLISSGVNVDQSFLDQLSTSAGKGDSSQMSVNTLRQKRAADSMIEPSGAAKR
FRNSNQNNNAITAQDDGEDPILAAFLLAKQVISQTQQEDDDDVSPDAIEAIQAALDSLGP
ADGYPYNLRRKSQGFSEQHREEIREANRNRKKQWRVINSDRNKDNDLRCRVHKRANVKFG
PDDSDEKSKWIDAEYTKRRRKRLQRSEMAERNRQEEQFLPGAEHLRTLLESLGEIDALEN
FNNAISSLIKDPKLLQEVTAKVNEGGKVLNGSLEGIAGLLTVNLNGGNGAAPRPGLNTSG
GGKILSFKLDHHNHALPSDVALEAANKPIFNIHEPVKEPLNLNSMGPSSSSQPFLPLSPV
VEPVLPPPKPKPPKPTKKVEDMTMEERLEYIMQTDPEDRVDLKQDEVPEETIVDPKFEKQ
LAAITGDVGSVNLTGTRPPPVSQVAAEHRPPPFWGKTPSTNSPSMGHQGSPGPMPASFKS
HLLGGDRDTPIIKPPQYSVPSKPRAGGVAGAFASRIEDKKAASLGFPPLLAAFRDKME*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG