YALI0E28644g

Overview

Description weakly similar to uniprot|Q04748 Saccharomyces cerevisiae YMR066w SOV1 hypothetical protein
Locus type CDS
Locus tag YALI0E28644g

Location

Species Yarrowia lipolytica Positions 3396866..3399244
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 2379 (nuc.)
Previous locus YALI0E28622g Next locus YALI0E28666g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E28644g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E28644gYALI0E28644g_mRNA-001YALI0E28644g_CDS-001

Nucleotide sequence

 

>YALI0E28644g
ATGTCTGGTAGGTCCCACTTAGAGTTCAGAAACTATCCGATAAGTGAAAAGTGTGCATCA
ACATTTCTCACTACTACACAGCTGTCCATGATGCTACGACTGGTTCGAACGTTCCGGACC
AAGGCAGGACGCACGAAAATTGCGCCCAAAACGAATTCGGCGTTTGATCCATTCAAAAAG
CCCGCTTTTCAACGGTTCGAAGATCTCCCAGCATCCCAACAAGAAGCTGCTAAGACCCAA
GCGTTACAAGAGTTCGATAAAAATGTGGACAACAATCCCCAGATGGAGATCCCTTCTGAA
TACAGCATGATCGCTGCCATTAAACAGGAAGCACGACAAAACCGACTGAATCGAGACGAG
ATTCGAGACAACATTCTACATTTCTTTCATCTCACCATGCAGGCTCGTGAGCAACAGATG
GCCCATCCTACAAACGTCACAGTTATTCAGAGAGGACGGGAGGACGACAGATCGCTTTTG
TTTGATGCTCTGGAGGTGCTGCCAAAAAATCACGCCGATATCTTCTCTCCCGAAGAGTAT
GTGGCATTTTTCAACCTCGCCAAGTTGGGAACAGTTAGTGATCAAGCTAGAGACATGAAG
ACTGTCTGTGACTTATTTTACCCTCTCAACATCTTTAGAGTGGACCCATACAATGAAATG
GAGTACCTGCAGCTGTTGCTAGACTCAGATCAAGCCCAGAAAGCACTCAAATACCAACAG
GCACGGCTGAATCACAAGAACCAGGACGTCAAAGAGCTGAGATGGTATCACGAGTTTGGA
GTTGCAGTCCTGCTATCTCTGGGGCGAATCAAGGACGCCAATTTCGAAGCAGGAAAGATC
ATCTCTCAATTTAGTTGGCTTGAGAGCAATCTGCTAGTGCACCTGTGTAAGACAGCCACA
GACTCGGAAACTATGGATAAATGGTCACAACAGCTTCTGAGACAAATGCAGGATACTGAA
GCCATCCTGACACGTGATCCAGCCGTTAGCTTGGGGAATCTCACATTCACAAACATTATC
ACCAAGCGTGGGGGAGTCAAGAGACCGTTTTGCGAGTCGGAAGAGCAGTTGGAGACTGCT
TTGAGTGCCAAGACAGTGTCTGTAGCTCATCTCACTGAGCTTACTAGACTCTACATCATG
AAAGGACTGGACATTAAGAAACTCATCAAAGATCCACGTGTGACACGACTACTAACCAGT
GATACCGACATTGGATTGATTCTAGCAACTGAGGCAGCGTTGGTGGCTAAGGAATCTAAT
AACAACTCAAACATAAAGTCACGTGCTGATCCAAATGCCGCTATCAAGCTCTTTGAGACT
CTGACTGATCAATGTCCCTCACTACTCACAACTCCACTGTTCTATACCCATTGGCTCAAT
GTGTTGACGTACTTTGATAAGCGAAGGGTGGGTCATGTGATTGAGCTGATGGAGGCAAAT
GGAGTTAAGCAGGACAGTTCGCATCTGGTTGCCATGGCAACATATTATCTGAAGCATGAC
TACGAGAAGGCCGTCTGTCTTTTGGAAACCGACACACCTGCAATTTGGGGGGTGTTTCTT
CGACATTATGCGCGGACCCAGGACGATGAACAGTTCAACAATATCCTTGAGCTGTTTCTT
TCCAAGAAAAGAAAGCCTAGTCCTAGTACAATTTCTGCAGTCGTCAACTATTATCACAAG
CAGAAGGACTACGGATCCCTATGGAGGCAGTTTAATCATATCACGCTTAACAAGTATAGT
CCTCATGACCATCTACGAACAGCTGCAGTCTTCTCTTCCCAGCTGTACAAGCTGCTGTGG
AAGATTCTGACCGACTACTACCGCTCCAAAGGCGACAGAGCGATTCTTGGAAAGCCCTCT
CATGTTCATTCAGTTGCTGGCACCTCCCCACGAGCTGACTCAGCATGGCAGGGTGAGTGG
GTCAGTGACGGTGTAAGAAAGTGGGAGCTGGTGAATGAAGAGTGTGCTCCTGCTCCTCGA
AACCTGTTTCTGAAGATGGTTGCTGAGCAGCAGGTCCACTCATGCAGTCCAATAGACATC
GTCCCTGTCTTCATTCGATCAGGTGACTTTGTGGGTGCTATTGCGGTTCTGCGTTTCTAC
AAGGATGTGGTTGGCTACGATATGGATGGAAAAGAGGCTGGAGAGATCTCACAAGTTCTT
GGAAAAATAAAGAAGCAGGTGTTCCGTACTCGGGACTTGAAGCGACCTGTTATGGACGAC
CATCCTCTTTGGATGGGCCTGGAGGTTGATCTGAATTTGTACATTGGAGATGAAGTTACC
GAGACTGTAGAAGAGGTCCTGAAGTGTCTCAAGGAGGGTAAAAGCACGGATTGTATATAG
TTGGAACCAAAACATTTAATTTTATTATCACTCGCATTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E28644g_CDS-001

Protein length: 780 aa.
Product: Conserved hypothetical protein

>YALI0E28644g_CDS-001 MSGRSHLEFRNYPISEKCASTFLTTTQLSMMLRLVRTFRTKAGRTKIAPKTNSAFDPFKK
PAFQRFEDLPASQQEAAKTQALQEFDKNVDNNPQMEIPSEYSMIAAIKQEARQNRLNRDE
IRDNILHFFHLTMQAREQQMAHPTNVTVIQRGREDDRSLLFDALEVLPKNHADIFSPEEY
VAFFNLAKLGTVSDQARDMKTVCDLFYPLNIFRVDPYNEMEYLQLLLDSDQAQKALKYQQ
ARLNHKNQDVKELRWYHEFGVAVLLSLGRIKDANFEAGKIISQFSWLESNLLVHLCKTAT
DSETMDKWSQQLLRQMQDTEAILTRDPAVSLGNLTFTNIITKRGGVKRPFCESEEQLETA
LSAKTVSVAHLTELTRLYIMKGLDIKKLIKDPRVTRLLTSDTDIGLILATEAALVAKESN
NNSNIKSRADPNAAIKLFETLTDQCPSLLTTPLFYTHWLNVLTYFDKRRVGHVIELMEAN
GVKQDSSHLVAMATYYLKHDYEKAVCLLETDTPAIWGVFLRHYARTQDDEQFNNILELFL
SKKRKPSPSTISAVVNYYHKQKDYGSLWRQFNHITLNKYSPHDHLRTAAVFSSQLYKLLW
KILTDYYRSKGDRAILGKPSHVHSVAGTSPRADSAWQGEWVSDGVRKWELVNEECAPAPR
NLFLKMVAEQQVHSCSPIDIVPVFIRSGDFVGAIAVLRFYKDVVGYDMDGKEAGEISQVL
GKIKKQVFRTRDLKRPVMDDHPLWMGLEVDLNLYIGDEVTETVEEVLKCLKEGKSTDCI*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG