YALI0E27005g - PDB1

Overview

Description uniprot|Q6C4G4 Yarrowia lipolytica YALI0E27005g PDB1 Pyruvate Dehydrogenase Beta subunit, putative
Locus type CDS
Gene name PDB1
Locus tag YALI0E27005g

Location

Species Yarrowia lipolytica Positions 3199515..3201299
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 1785 (nuc.)
Previous locus YALI0E26983g Next locus YALI0E27027g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E27005g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E27005gYALI0E27005g_mRNA-001YALI0E27005g_CDS-001

Nucleotide sequence

 

>YALI0E27005g
TCGACAAACGATATCTGAGATCTTTTTCGGTCCCACAGCAACAAGCCACAAACATGTCTG
CCATCAAGCAATTGAACCGTCTGGCCGCCACCGCCAAGACCTCTGTTCTCAAGCCCGCCT
CCAAGCAGATTCTGCTGCCCACTGCTGGCCAGCAGGCTGCCATCCGAATGATGGGCCAGA
CCCGAGCTGCCTCAACCGAAGGCGGCGCCACTAACGTGAGTATTTTTTGTGTGAACGACA
CGATATATACACGACGGCCGTGCGCTTGCGGCTTCGCGATGCGCCCTGAATGGGGCAACT
CGAGCGTTGTGTAACGGGTGTTCATCAACAGCAAACAGTGCTTTTCGGACTTAAGACATG
GCAGAAGAAGCAAACACGGTTATAGCGAGAGAGATCACAATGGAGTGACGAGCTTTCAGT
GATATTTGCCACCAGTCAAATTTTCAGCAACTCCTGAAACGCACCCATTTTATCATCATT
GTGACGCGGACATTCAGCCTCATGCTGTAACTGCACTCCGTGTCTGGAGCTGCCGGAGTT
ATCAAAGCTGTAGGTGCCAATTGTGAAATAGCGATTCGGCGATTCAGCCGTTGATTGCGT
TCCTGCTATGTCGCAATTGTACAATGCTCTGTACACTTCCAACAACATCAACATGACAAC
ACCCAAAACAACGTACTAACCTAGATGACTGTCAGAGACGCCCTCAACACCGCACTGCGA
GAGGAGATGGACCGAAACGATAATGTTTTCATCATGGGTGAGGAGGTCGGCCAGTACAAC
GGTGCCTACAAGGTCACCAAGGGCCTTCTCGACAAGTTCGGCGAGAAGCGAGTGGTTGAC
ACCCCTATCACCGAGATGGGTTTCGCCGGTGTTTGTGTCGGTGCCGCCCTGGCCGGTCTC
ACCCCCGTCTGCGAGTTCATGACCTGGAACTTCGCCATGCAGGCCATTGATCAGATCATC
AATTCCGGTGCCAAGACCTACTACATGTCCGGAGGTACCCAGCAGTGCAATGTCACCTTC
CGAGGTCCTAACGGTGCCGCCGCTGGTGTTGCTGCCCAACACTCTCAGGATTTCACCGGG
TGGTACGGCCAGATTCCCGGTCTCAAGGTCGTCTCTCCCTACAGCTCTGAGGATGCCAAG
GGTCTGCTCAAGGCCGCCATCCGAGACCCCAACGTGACTGTTTTCCTCGAGAACGAGATC
ATGTACGGAGAGTCTTTCCCCATGTCTGAGGAGGCCATGTCCCCCGACTTCGTTCTGCCC
CTTGGAAAGGCCAAGATTGAGCGAGAGGGTAAGGATATCACTCTTGTCGGTCACTCCCGA
AACGTCGAGACCGCCCTCAAGGCCGCCGACCTCCTCAAGAAGCACCACAACGTCGATGCC
GAGGTCATTAACCTGCGAACTGTCAAGCCTCTCGACACTGAGACCATTTTCAACTCCATC
AAGAAGACTAACCGACTTGTCTCTGTCGAGGCTGGCTTCCCCGCCTTTGGCATGGGCTCC
GAGCTCTGTGGTGTCGTCAACGACTCCTGGGCCTGGGATTACCTTGATGCCCCCATCCAG
CGAGTTACCGGAGCTGAGGTTCCCACTCCTTACGCCATTGAGCTTGAGAACTTCGCCTTC
CCCACACCCGAGATTGTTGTCAAGGCTGCCAAGGACGCCCTCTACATTGAGGAGTAGAGC
GCTCCAGCTACAACATGTAGGTACATACAGTAATTATTGCACGGATAGGAGCTTATGTAG
AGTATGATTAACGTATTTAACGCAATTCAACAAGTGACTGAAGCA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E27005g_CDS-001

Protein length: 385 aa.
Product: Pyruvate Dehydrogenase Beta subunit, putative
Gene: PDB1

>YALI0E27005g_CDS-001 MSAIKQLNRLAATAKTSVLKPASKQILLPTAGQQAAIRMMGQTRAASTEGGATNMTVRDA
LNTALREEMDRNDNVFIMGEEVGQYNGAYKVTKGLLDKFGEKRVVDTPITEMGFAGVCVG
AALAGLTPVCEFMTWNFAMQAIDQIINSGAKTYYMSGGTQQCNVTFRGPNGAAAGVAAQH
SQDFTGWYGQIPGLKVVSPYSSEDAKGLLKAAIRDPNVTVFLENEIMYGESFPMSEEAMS
PDFVLPLGKAKIEREGKDITLVGHSRNVETALKAADLLKKHHNVDAEVINLRTVKPLDTE
TIFNSIKKTNRLVSVEAGFPAFGMGSELCGVVNDSWAWDYLDAPIQRVTGAEVPTPYAIE
LENFAFPTPEIVVKAAKDALYIEE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG