YALI0E26235g

Overview

Description similar to uniprot|P53044 Saccharomyces cerevisiae YGR048w UFD1 ubiquitin fusion degradation protein
Locus type CDS
Locus tag YALI0E26235g

Location

Species Yarrowia lipolytica Positions 3110907..3112156
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 1250 (nuc.)
Previous locus YALI0E26213r Next locus YALI0E26257g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E26235g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E26235gYALI0E26235g_mRNA-001YALI0E26235g_CDS-001

Nucleotide sequence

 

>YALI0E26235g
ATGTTTGGAGGAACTGCACAATGGGGCGCCACGCCTTTCCGAAACCGAACCCAGAAGTTT
CAGGACTACTACCGATGTTACCCCATCGCCATGATGCCCGGTAAGGACCGAGAGTCTGCC
AACTACGGTGGCAAGATCTTTTTGCCTCCCTCGGCACTTTCCAAGCTCAGTATGCTGCAC
ATTTCGTACCCGATGTTGTTCCAGCTCAAAAGCGAGGAGAACGACAATGTGACGTACGGT
GGCGTTTTGGAGTTCATTGCCGAGGAGGGCCGCGTCTACTTGCCCCAATGGATCATTGAG
ACTCTGGATGTGGGTCCTGGATCTCTGCTGGAAATTTCGTCTTGTGATTTGCCACTGGGT
AAGTTTGTCAAGTTTGAACCCCAGAGCGTTGATTTTCTGGACATTTCCGACCCCCGAGCA
GTGCTGGAGAGATCATTCCAGAACTTCTCGACCCTCACAGTCGGAGACGTGTTCAAGTTC
AGCTACAACGACAAGACATATGGAATGAAGGTGCTGGAGGTCAAGCCCGACCTGGAGGAC
AAGCACTCGGTGTGCTGTGTGGAGACGGACATTGAGGTTGACTTTGCGCCTCCGGTGGGC
TACGTGGATCCCTCCACCCAGAGTGACTCCAATTACGGAAGAGCCATCAAGACACCTGGT
ACCAGTGGATCTTCTACTCCTGCACCAATGGCAGCCGCGGGAACCATGGCCCAGTCTATT
GGTTATTCGAAGCTCGCCCAACAGACCATTAAGTCTGCTTCTAAAAACACCTTTTCCGGT
GGCGGCCAGAAGCTGTCTGGAAAAGCCGTCAAGCCTGAAGAAGAGGCCTCCCTCGACGAG
CACTTCAAGGAGCTCGTGGGTCTGGGATCAACAGACACAGACGCGAACCCCCAGCCTTTA
CGTCTCCCTTTTGGGCAGCTATTCTTTGGTTTCCCCCTAGTGCCTGTCAAGCCTTCTGAA
GACGAAGAGACACAGACCGAGGAGCAGCAGCAACAGCCCCACTTTTCGGGCACAGGCCAG
AGTCTGCGAGAAAGTCGAAAACGCAAGGAGCGCAACTCGTCGGCTGGAGCTGCGGGAGGA
ACCCCCAAGAAGCCCACCAGTCCCGAAATGGTGGTCATTGATTAACCATGGCCAAGACGG
CTGTGGATTAGAGGCAGACTTATATATCTGTATTTATATGTGTTGGGCAACCAACCCAAG
TTATTATATTGAATGAGTAAAATAGGAGAAGTAAATGGTAATACTCATAC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E26235g_CDS-001

Protein length: 375 aa.
Product: Substrate-recruiting cofactor of the Cdc48p- Npl4p-Ufd1p segregase, putative

>YALI0E26235g_CDS-001 MFGGTAQWGATPFRNRTQKFQDYYRCYPIAMMPGKDRESANYGGKIFLPPSALSKLSMLH
ISYPMLFQLKSEENDNVTYGGVLEFIAEEGRVYLPQWIIETLDVGPGSLLEISSCDLPLG
KFVKFEPQSVDFLDISDPRAVLERSFQNFSTLTVGDVFKFSYNDKTYGMKVLEVKPDLED
KHSVCCVETDIEVDFAPPVGYVDPSTQSDSNYGRAIKTPGTSGSSTPAPMAAAGTMAQSI
GYSKLAQQTIKSASKNTFSGGGQKLSGKAVKPEEEASLDEHFKELVGLGSTDTDANPQPL
RLPFGQLFFGFPLVPVKPSEDEETQTEEQQQQPHFSGTGQSLRESRKRKERNSSAGAAGG
TPKKPTSPEMVVID*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG