YALI0E24893g

Overview

Description similar to uniprot|P53973 Saccharomyces cerevisiae YNL021w HDA1 histone deacetylase A
Locus type CDS
Locus tag YALI0E24893g

Location

Species Yarrowia lipolytica Positions 2971411..2974296
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 2886 (nuc.)
Previous locus YALI0E24871r Next locus YALI0E24915g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E24893g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E24893gYALI0E24893g_mRNA-001YALI0E24893g_CDS-001

Nucleotide sequence

 

>YALI0E24893g
ATGGACAGTGATCGGGATATCAAGGACGCGGGGGAGCGTGCAGCGGCCGTCGAGACCAAT
GTTGGTGAGATTACCGCGCCCGACACGTCTGAAAAACCGCTTCCGGGGGCTGAAACAGCT
GCTGATGAGCCCTCTGTTTCGATTGAACAAAAAGCTGAACCTGGTGCTAAGATTGAAGAG
GATCACAAGAACGGAGTTGAAGGGAAGGATGAGAAGAAGGAGGAGAATGAGCAAGAGGTA
GTCAAAGCAGAGGATAAGACCGACGAGAAGCCCGAAGTGACTGCCAACGATAAAATCGAT
GAGATAAATGAGGCTCCTGCTAGCACCGACGTCAAGACTGAAGCCGTCGTCGAACCCACC
ACACACGACACGAACGCCGCAACTAGCACGACCGGAACGGGCACAACCGACACTACAGCA
ACCACCACTACAGCAACCAACACGAACGAACACGACCTACAGGCGATGCACGACACTGGT
GCGGTGGCCGATGGCGATTTGATGGACACGTCGGACGACTATAAAATCAACATGGATCAG
GTGCAGCTAGGGGACTATGACAGCGCTTCCATCTCCGGCCAGATTGCTGAGCGAATGGCG
CAGCCCATCAAGACGGAGTTCGATACCAACTTTGTGCCCCAGACTCTGTCGCTGGTGGAC
CTGGAGCACGTCAACGGCAAGCGTAAGTTTGAGGAGACAGACACGCCTGAATTCGACACA
CAACGCGCCCGTGAACTCATCCTCGACGCAGACGTCAACCCAGCCCTCAAGGCTCCTCAG
CTGCGTTACATTCCGCTGAAAACTGGAGTCTGTTACGACGTGCGAATGCGATACCATGCT
CGTCTGGTGTCCACATCCTACGACTACGTGGACCCTCATCCAGAGGACCCGAGACGTATT
TTCTCAGTGTACAAGGCGCTGGTGGATGCAGGACTAGTGGTGGATCCCGAGTATCTAGGT
CTGGAGGACATTGGCCCACTGATGGAAAAGATTCCGATCCGAGAAGCCTCGCTCGACGAG
GTTCTGGAGGTGCATACCCCCGCACATGTGGACTTCCTAGCGTCGACGGAGAAGATGAAC
CGACCGCAGTTACTGGAGGAGGGCGAAAAGGGCGACTCGGTCTATTTCAACAATGAGTCG
TTCAGTGCAGGCAAATTGTCCTGTGGAGGAACCATTGAGACGTGTAGAGCCGTGATCGAG
CGGAATGTCAAGAACGCCATTGCCGTCGTTCGTCCACCAGGCCATCACGCCGAGCCTGGC
AACCCTGCTGGCTTTTGCATGTTTTCCAACGTGGCTGTGGCTGCCAAGGTGCTACTGAAA
CGGTACCCTGAGCGAGTTAAGCGGATCCTGATTCTCGACTGGGATGTTCATCACGGAAAC
GGTACCCAACGAGCCTTTCTGGATGACCCTAGGGTGCTTTACATTTCTCTGCACCAGTAC
GAGAACGGAAAATTCTACCCTGGAGGCACATTTGGAGCTCACACGTCTGTGGGAACTGGA
GCTGGAGAGGGATACAGTGTCAACATTCCCTGGAGTGCCCCTGGAGCTGGCGATGCAGAC
TACATTTACGCATTCCAAAAAGTCGTCATGCCAATTGGTATGGAGTTTGACCCTGATTTT
GTGATTGTGTCAGCTGGTTTCGACGCAGCCGAGGGTGATCTTCTTGGTGGGTGCAAGATT
ACGCCTTCGGGATATGGTCACATGACCCACATGCTCAAGGGCCTGGCTTCTGGAAACCTG
GCTGTGGTGCTGGAGGGAGGTTACACTTTGGAGGCCACTGCCAAGTCTGCCTTGGCCGTC
ACCAAGGTGCTTCTTGGAGAGGCGCCTCTTCCTCTTCCTGCGGCCTTCAAGCCCACCTCT
GCAACTATCTCTGTTGTCCAGGATGTGGTCGAGACCCAGTCTCAGTACTGGCGATGTCTG
CAGCCTGGCTTTGAGACTATCATTCCCAAGGAGATCACCACGTACGATCTGATGGGTGAC
GTCGTTCGATCCTACCAGGCACGCAAGCTGTTCGACAAGTACAAGCTATCGGCTCTTCCA
AACATGGGAGGAAGCAGCAGTACGCCATCTGGACGGGCTGCCACTGCTGGTCCTGCTTCA
GGATCGTCAATCTCTCTGGCAGACCAGATTCTTGCATCACCAAAAATCCACTCGGCCGAA
ACCGTGGTTGTGTTTGTGCATGATCCTCCTCAGATCTGGGGTAAGGTGGACGCTGTCACT
GGCGAGCTTGACTTTGATTCCTGCATGGTTGACGTGACGACAAAGTGGCTGGAGTGGGCA
CATGGACGGGGATACGGTATCATTGACGTCAACATTCCCAAGGCTTTGAATGGAGCTGAC
GACGACAACTACTATGCACTGTTTGCCAGCCAGGAGGTGTGCCTGTATCTGTGGGACAAG
TACCTCAGTGTGTTTGACGCGCAGAACGTGATCATGGTGGGCTTTGGTGATGCCTACGCT
GGTCTGGTGCATCTGGTAGGCCACCGAGACACCCGAGAAAAGGTCAACTGCGTCATCAAC
TTCATCTCCGAGACCCAGCTGCGCCCTATTGTCTCCATTATTGACGAGTACATCACCGAC
TGGTTCTACCGATCGTCACTGGTTTTCACTGCGGACACCCATCCCTGCTGGGATGTGAGC
ACTAACCCCAAGAAGCCAAGGCGTAAGTTTGGACGAGTGCTCCGATGTGACAGCACCGGT
CTACATCGAATTGTGGAGGAACGGTTCAAGGAAGCAGTTGAGTTCATTGACGAGCAGCTG
GAGGATGATGAGGAGTAGAGAGAGAGTGTGCAAAATAAAACGAAATGATGTATTTTTATA
TAGAACCCCTGAAGTCAAATGATTTGAGCTGTATGTACGGTACATACTGTACCTACTGTA
TCATGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E24893g_CDS-001

Protein length: 926 aa.
Product: Catalytic subunit of a class II histone deacetylase complex, putative

>YALI0E24893g_CDS-001 MDSDRDIKDAGERAAAVETNVGEITAPDTSEKPLPGAETAADEPSVSIEQKAEPGAKIEE
DHKNGVEGKDEKKEENEQEVVKAEDKTDEKPEVTANDKIDEINEAPASTDVKTEAVVEPT
THDTNAATSTTGTGTTDTTATTTTATNTNEHDLQAMHDTGAVADGDLMDTSDDYKINMDQ
VQLGDYDSASISGQIAERMAQPIKTEFDTNFVPQTLSLVDLEHVNGKRKFEETDTPEFDT
QRARELILDADVNPALKAPQLRYIPLKTGVCYDVRMRYHARLVSTSYDYVDPHPEDPRRI
FSVYKALVDAGLVVDPEYLGLEDIGPLMEKIPIREASLDEVLEVHTPAHVDFLASTEKMN
RPQLLEEGEKGDSVYFNNESFSAGKLSCGGTIETCRAVIERNVKNAIAVVRPPGHHAEPG
NPAGFCMFSNVAVAAKVLLKRYPERVKRILILDWDVHHGNGTQRAFLDDPRVLYISLHQY
ENGKFYPGGTFGAHTSVGTGAGEGYSVNIPWSAPGAGDADYIYAFQKVVMPIGMEFDPDF
VIVSAGFDAAEGDLLGGCKITPSGYGHMTHMLKGLASGNLAVVLEGGYTLEATAKSALAV
TKVLLGEAPLPLPAAFKPTSATISVVQDVVETQSQYWRCLQPGFETIIPKEITTYDLMGD
VVRSYQARKLFDKYKLSALPNMGGSSSTPSGRAATAGPASGSSISLADQILASPKIHSAE
TVVVFVHDPPQIWGKVDAVTGELDFDSCMVDVTTKWLEWAHGRGYGIIDVNIPKALNGAD
DDNYYALFASQEVCLYLWDKYLSVFDAQNVIMVGFGDAYAGLVHLVGHRDTREKVNCVIN
FISETQLRPIVSIIDEYITDWFYRSSLVFTADTHPCWDVSTNPKKPRRKFGRVLRCDSTG
LHRIVEERFKEAVEFIDEQLEDDEE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG