YALI0E24849g

Overview

Description weakly similar to uniprot|P53617 Saccharomyces cerevisiae YNL251c NRD1 involved in regulation of nuclear pre-mRNA abundance
Locus type CDS
Locus tag YALI0E24849g

Location

Species Yarrowia lipolytica Positions 2968100..2970560
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 2461 (nuc.)
Previous locus YALI0E24827g Next locus YALI0E24871r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E24849g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E24849gYALI0E24849g_mRNA-001YALI0E24849g_CDS-001

Nucleotide sequence

 

>YALI0E24849g
ATGTCTTCGGCAGTGGAAACTGAATTCGAGGCGCTTTTGGCATCCATGTTGGTGGCAAAG
GCTCCAGGAGTGTCTGGCTCCAAGATTAACGGAATTCGAGAGTTGGCCATGAAGAACGTT
GATGTGAGTATTATCCTGACTTTTGTGACGACCAACCGGTAGATCGTATGGTATATATGG
AGGTGAGACGCAACGGTGACAATGATGACGACAACACACGAGTGATATCAGGGACTTTTA
TCGTATGAACTGACACGCTTGTCCAGTGTCTATTTATCAATGTGTCTTATTGTCGGAACA
TTAACAAATGATACCCTTATTTTGTTCTTACACAAGTGGAGATGGCGACCCGGCTGCCAC
ACCTACAATACAAAAAAAATCACCGTTATTTCACACTGTTATTTTGCTTTCATTGCAGTA
AAACACGCGCGCGCAGTATAACACGTACACAGTAATCAGTTGTACGTTGCAACTGTACCA
TTGTATCTGGTTTGAGGGTGAACGAACATCTTGTCACACTCCAATATGGTGATAAGATGG
CTCCCCAAGTTTTCAAATCATCTCAAACCACTATCGTAACCACCGTAACCTACGAGATCA
TGGTACCCCATAGCCCTTCCCCAACGTATTACTAACCCAGATGGAATCCACTCTCATTCC
CATCCTTGAGCGACATCTCAACAAGACTCCTCTGAGCCACAAGCTTGGAGCCATGTATGT
TCTAGATGCCGTTGCTCGAGCGTACCAAGAGGAGAACAAGAAGGTTGGCCATGCTCTGAA
CCCCCAAGCTCCCGACGGCTCCCATGCCAAGGGTCTTTTCCGAATCTCTGAGTTTGTCGA
GAGAGCTGCTCGAGAGTGTGTAGACCATACTTCCTCTGACGACACTCGAGACAAGCTGGA
CAAGCTGGTGGAGATTTGGCAGAAGGCTGGAACTTTCCCCCCTGACTCCATGCAGAGAAT
GCGGGGCTTCTTTAGTATGTCCAAGACCCCTGAGCAGTCTCCTCCCTCGCAGCTGATTGA
TCTCATTAACCAGGGCCAGCCCCCTGTCACTGGATCCACAGCAGCTCCTGCTGGAGGCGC
CAATGCTGCTGCTGCTCTGGCCGCTGTTCTTGGCGGTGCTGCTCCCTCTGCTCCCGCTGC
CTCCAACCCCGTGCCTACTGATACAGCCTCCATTCTGCAGGCTCTTGCTAGCATGAACGC
TGGCGCTGCCGCGGGCGCACCTGCCCCCGCACCCGCTGCCAACCCCAATGCTGCTGCTGA
TGTGCTCAAGATGATCATGGCTCAGTCTGGCGGTGCTCCTCCTACCATGCCCGGTGGAGA
TGTCAACCAGGCCTGGAACCTTCCGTCGAGAGACCCCCGAGACCCCCGAGATCCCCGAGA
CAACTTCCGAGACCGTTCTAGAGAGTACAGAGACAGGGACCCCCGGGACCGAGATCCCCG
AGACCGTGATTTCGGACGAGACCGAAACTACCGAGACCGTTCTGGAGACCGAGGGGGAGA
CCGAGGAGGAGATCGGGACTTTGGCCGAGGCCGAAACCAGAACCGACAACCTCCCGGAAC
CGACACCTTTGAGGACGACGCTCCTCCTCCCACCGAGAAGAAGGTCACCTACGACAACTC
TTTGCCTCCTGGAACCATCAAGGTGCTGTCTCGAACTATCTTCATTGGAGGTGTGACTAT
GTCGACCACTAACGAGGAGCTTCTATCCATTCTGCGACCCTATGGCCGAACCCAGTCGCT
GGTAATGCACAGAGAGCGAAAGCACGCCTTCTGTAAAATGTACACTCGAGCTGAGGCCGA
GGCCGTTCTGCAGAACTTCACCCGACTCAACCAGCAGGGCAGTATCACTCTGCGAGCCCG
ATGGGGTGTCGGTTTCGGTCCTCGAGACTGCTCCAACTACCAGACCGGTATTTCCGTCAT
CCCCATTGCCACGCTTACCGAGGCAGACATGAAGTGGGTGGTTTCTGCTCCCTACGGAGG
CACTGGAGGAGTCCCTGTGGCTCCTGGCATGTGTATCGAGGAGCCCGATATCGAGGTTGG
TACCGGCGTTTCTTCCAAGGCCAAGTCCAAGCGAATGCCCACCAACGCCGGTGGCCGAAA
TGGACCCCGATCTTCCTTCCCTGATCGAGAAGGGGGCGGAGGATTTGACCGAGATGGGGG
ACGAGATGGAGGCCGAGGTGGGGGCTACGGAGGAGACCGAGGTGGATACGGAGGAGGTTA
TGGAGGAGGTTACGGAGGAGGAGGCTACGGAGGCAACGCCAACCACGTTCCTGTCGGCAT
CAGATCTCCCGCTCCTCCACCACAAGTCAACGCTGCCCAGATGGACGCCAACGCGGCTCT
GGCAGCTCTCTTCCCCAACGGTATCCCTTCCATGGGTGGCTTTCCTCCTCAGCAGTAGAT
AGCTTACTAAGAGAGGAAAAAATGTATAGATAGATTAATGATTATGATATTTAAAGGTTT
T

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E24849g_CDS-001

Protein length: 627 aa.
Product: Conserved hypothetical protein

>YALI0E24849g_CDS-001 MSSAVETEFEALLASMLVAKAPGVSGSKINGIRELAMKNVDMESTLIPILERHLNKTPLS
HKLGAMYVLDAVARAYQEENKKVGHALNPQAPDGSHAKGLFRISEFVERAARECVDHTSS
DDTRDKLDKLVEIWQKAGTFPPDSMQRMRGFFSMSKTPEQSPPSQLIDLINQGQPPVTGS
TAAPAGGANAAAALAAVLGGAAPSAPAASNPVPTDTASILQALASMNAGAAAGAPAPAPA
ANPNAAADVLKMIMAQSGGAPPTMPGGDVNQAWNLPSRDPRDPRDPRDNFRDRSREYRDR
DPRDRDPRDRDFGRDRNYRDRSGDRGGDRGGDRDFGRGRNQNRQPPGTDTFEDDAPPPTE
KKVTYDNSLPPGTIKVLSRTIFIGGVTMSTTNEELLSILRPYGRTQSLVMHRERKHAFCK
MYTRAEAEAVLQNFTRLNQQGSITLRARWGVGFGPRDCSNYQTGISVIPIATLTEADMKW
VVSAPYGGTGGVPVAPGMCIEEPDIEVGTGVSSKAKSKRMPTNAGGRNGPRSSFPDREGG
GGFDRDGGRDGGRGGGYGGDRGGYGGGYGGGYGGGGYGGNANHVPVGIRSPAPPPQVNAA
QMDANAALAALFPNGIPSMGGFPPQQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG