YALI0E23628g

Overview

Description some similarities with uniprot|O13845 Schizosaccharomyces pombe RNA-binding protein Rsd1
Locus type CDS
Locus tag YALI0E23628g

Location

Species Yarrowia lipolytica Positions 2787718..2790578
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 2861 (nuc.)
Previous locus YALI0E23584g Next locus YALI0E23650g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E23628g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E23628gYALI0E23628g_mRNA-001YALI0E23628g_CDS-001

Nucleotide sequence

 

>YALI0E23628g
GCACTACCTTTTACTTGTACATCCATCCATCCATCGGCTGCTCTCATAAGCAACTCTTCT
TCCGCAACGTGCCTGCTCTTCCATCTCGAACCTCGAGCGCAAACACACGACGAGAAGAAG
CCCTAATTCGCCAAGCAACAACGAGCAAGTCACCATATTGACCACGCAGCAAGAAAAGAA
ACGACTCAAACCGCTCATCTCTTCGTCGACCAACGACATGTCGCCAAATGTGCCGCAGCT
TCCGTCTGAACAGGTGTCGACCAACCTCCCGCTAGACTCGCCCAATGGCGTAGACGGCCG
AGACTCGGGGTTCTCGTCCGGAGTGTCGTCCGGCAAAGACCCCAGCACCAGCTCGGGCAC
CAACTCGGGCTCCAACTGCGAAACGTCATCGGGCTCGGGCTCGGGCTCCAACTCCGCCAA
CGAGGGCTCGGCCAATGAGGGCTCCAAACCCGAAACCAAGTCTGCGCTCAGAACTAAGAA
GGACGCCGCCACCGCCCAGACCTCCGCCAAACGCTCCCTCTCAGACACGCTCCCCAAGCA
GGTGGAGACGGTGGCGCCTCGATCGAGCTCCAACTCAAAGTACCGCAAGCTTGACGAAAT
GTTCTCCAACGAAGAGGCAAAGTGGAACGGCGAGACTCCTCCCGTTTCTCTGTCCAACAC
CCCCTCCGACAAGTTCCTCTCGCCTCCTGCAAGCGAAATGACCACCAACGCTACCTCGTC
CAGAGACACCCGACGACGATACCGGTCAAAGTCGCCGCAGAGACCCAAGGAGGACTTGCG
ACGAGACGACCACACCAACCGCCAGTCGTCCCGAGAGGAACCCTCTGCCCAGCGTCGCCA
CAGCAACCACAACCGCAATTCCTACTACCCCGGCTACTCAAGGGATGCACGAGACCGTGA
CTCCCGAGACCGAGACCGAGACCGTGACCGTGACCGTGACTCCAGGGACCAAAGAGACCG
AGACAACTTCGAATGGAAACAGTTTCGAGACCGTGACCGTGACCGTGACCGTGACTACCG
CAACACAAACGGGTGGGAGCGCTACAGACCTGACTGGGTACAGGAATGGGACACATACCG
CAACCGGGACAGCGAGAGAGCGCGGGCCCGGTACCGTCGATGGGAGACGGAGCATGAGCG
CAACTACGAGCGCCGAGGCCCCATCTCCAAGAACCACGAGCTGTCTGCCGAAGACAGAGA
CAAGCGAACTGTTTACGTTCAGCAGGTGGCCCCCCACGTGCAGTCGACCGAGCTGTTTGA
CTTCTTTGCAGAAGCCGGCCCCGTGCATGACGTGTCGCTCGTCAAGGACCGCAGCAGTAG
ATGCCGGGGTGTTGCATTTGTGGAGTTTGAGGACGTGGAGTCTGTCTCCCGCGCCATCGG
ACTCACAGGCCGGTCTCTTCATGGCCAGGCTCTTCTTATTCGGTGCACTGACAGTGCTCG
AAACCGAGAGGAGCAGCAGTCCGAGGCATCTTTCAACAGCTCTGGTGCAGGCAGTACCCA
TGCCGTGGCCAATGTGAACGCATCCACATCTGCCATTGACAGTGTTCGGTTCCACCGTCT
CTATGTCGGCAATATTTATTTTGGTGTCACAGAGGGCGAAATCATTCAGATCTTCGAGGC
CTTTGGACCCATCGAGTTTGCCGACCTCCAAAAGGAGAAGACGGGTAAGTCCAAGGGCTA
CTGCTTCATCCAGTACGTCAATCCTGATGATGCCAAGACTGCTCTTGAGAAGATGAACGG
CTTTGAGCTTGCTGGTCGCAAGCTCAGAGTCGGTCTCGGGCTGGGAGAACGTGGGGCCAC
CAAGGCCCGCAAGATCCTCACCGAGATTGGTCTTCTGGCTGCAGACGGTGTGTCTCGCTC
TGCAGACCAGGTCGCCACCCAGATTGCAGTCGACCGTCAGAACCAGAAGCTCAAGCTCAA
GGACCAGCGTAACCAGCAGCGCGAACTCGAACAACGTGAAATCGAGTTGCGAGGCACCTC
ACACGTCAAATCTGAACTCGATGGCCACAAGCAGTACCAGGGGTCTGTGGAGTTCACCTC
CAAGTGTGCCCTTCTACGAAACATGTTCAACTACAGCGAGTGAGTATCACAGAGACACAA
CAGGTTACTAGAAGCATTACTAACAATAGGGAGACCGGAAACTGGGTTGAAGAGCTCAAA
GAAGATGTCCGCCTCGAGTGTGAGGAAAAGTTTGGCCCTGTAGAGTCCATCTCGTTGGAA
GTGGAAAAGGGAGAGATCCTGCTCCGGTTCCACAATGAGATTGACTGTGTCAAGGCGGTC
AACAACCTGCACCAGCGATATTTCGGAGGCCGTGTCATCAACGCCTCTCATATTTCAGAG
CAAGATTTTGAAATGAAGTGAGTATCGCGTCCACACTAGATGACGACGATCTCCAGCAGC
TAACCCCCAGACCCTCCATTCCACAGTCACCCGCCACAGATCGGGAGGAAGTTGCTGCTC
CTTAGTCCTTTCACCACCCCCAACAATAATGGTTTTTTTTCCAGCTTTTGTTCCCAGTCG
TGTGCTCCTTTCTTTCTGCCTTCATCATGTTGCATCCACACATACCCCCATGATGAACAG
AAGTTAATCTGGAGACCGCCCATCACCAAAAACAAAAGCATCTCATCCAAAAATGTCCTC
GACATGGGTCCGTTGTACCCACTTATTTATTGAGGCGCATGTGCCGTTCCTGTTCATATT
GTGATCCTGTTCCTTTTTATTTTGCTGCCTTTTTTTTATCCATAGTCCTTTAGGACACCC
CCGCAGCCCCATTTTACCGGCGTATGTGCCGAATTGCGTTATTTTTCTTGATCGCTTGCT
ATTCTTTTCCTTTTCCTCAAGAATACAATTGATGATATCGC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E23628g_CDS-001

Protein length: 698 aa.
Product: Conserved hypothetical protein

>YALI0E23628g_CDS-001 MSPNVPQLPSEQVSTNLPLDSPNGVDGRDSGFSSGVSSGKDPSTSSGTNSGSNCETSSGS
GSGSNSANEGSANEGSKPETKSALRTKKDAATAQTSAKRSLSDTLPKQVETVAPRSSSNS
KYRKLDEMFSNEEAKWNGETPPVSLSNTPSDKFLSPPASEMTTNATSSRDTRRRYRSKSP
QRPKEDLRRDDHTNRQSSREEPSAQRRHSNHNRNSYYPGYSRDARDRDSRDRDRDRDRDR
DSRDQRDRDNFEWKQFRDRDRDRDRDYRNTNGWERYRPDWVQEWDTYRNRDSERARARYR
RWETEHERNYERRGPISKNHELSAEDRDKRTVYVQQVAPHVQSTELFDFFAEAGPVHDVS
LVKDRSSRCRGVAFVEFEDVESVSRAIGLTGRSLHGQALLIRCTDSARNREEQQSEASFN
SSGAGSTHAVANVNASTSAIDSVRFHRLYVGNIYFGVTEGEIIQIFEAFGPIEFADLQKE
KTGKSKGYCFIQYVNPDDAKTALEKMNGFELAGRKLRVGLGLGERGATKARKILTEIGLL
AADGVSRSADQVATQIAVDRQNQKLKLKDQRNQQRELEQREIELRGTSHVKSELDGHKQY
QGSVEFTSKCALLRNMFNYSEETGNWVEELKEDVRLECEEKFGPVESISLEVEKGEILLR
FHNEIDCVKAVNNLHQRYFGGRVINASHISEQDFEMK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG