YALI0E22605g

Overview

Description weakly similar to uniprot|Q96UP3 Schizosacharomyces pombe Telomere length regulator protein rif1
Locus type CDS
Locus tag YALI0E22605g

Location

Species Yarrowia lipolytica Positions 2668717..2672513
Strain CLIB 122 Strand Sense
Chromosome YALI0E Total length 3797 (nuc.)
Previous locus YALI0E22572g Next locus YALI0E22627g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E22605g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E22605gYALI0E22605g_mRNA-001YALI0E22605g_CDS-001

Nucleotide sequence

 

>YALI0E22605g
ATGGGTGAGTATGAGAGAGATGGGGAGGGAGATATGTGGCTAAAACACGTGGCCAAAGCA
CGTGATCGAACCACGTGACCCCGTATTTGGGCTGGTGGTGGTTCGATCTGAAGACGTGGC
TGGTGATCTGGGTGGGTGGTGGTTGATGCCAACATGTCACGAGTATGATTCTGAGCAAGA
CTAACCCAGTGGGCAACTTCCGAACCCGAAGTCGAAATGCCCATCGCAAGACACAGGTCG
AGGAGGTGGCTGAGGTGATTGAGGTGGAGGAGAGCGACAGTGATCAGGACATGGAAGTTG
AGGAGGAGACTGAAGAGAAAGAAGAGGATGAGGACGAGGATGCTGAAGAGGGGGAGGAGG
ACGCGGAGGACGAGGAGGACGAGGCAGAGGGGGAGGAAGAGATTGAGGTTGAGGAGGCAG
AGGGGGAGGAGATAGATGTTAAAACTGACGCTGACGCGGAGGCTGTCGACGACAATTCAT
CGTGTGAACCATCTACCGAGAACGAAGAAGAATCAGACCGATCTCGAGGAACGGAGACCG
AAGAGGAAGAGCCCTGTGAAGCTGCCGAAACGAAACCCAAGCCCATCAAGACCACAAACG
GAACATCCAAGCCCAGCTCAGAAGCTATCACGCCCAAGAAGAAGGTCTCTTTCACCTTCC
AATCGACTCCCAACACTCCCACTTCAACTGGAGGTATTCTGAAAAGAAATGGTCAACCTC
TTGATCAGAAAATGACTCGTGAAAACCTCAAGAGTGCTCTGGCAAACGCTACCAGAAAGC
TGACTCAAACCGACCAACTAGGAGGCCCTGATGACTCTGGCTTTGGAGATGGAGGACAAC
GGTTCTCAATCTACAGCAGTTTAAATAGTTTTCTGAGAGTAGACGTCTCTCAGGACGACA
TGAAGAGTCTTGCATCACACGCCCGCGTTCTCTCGGAGTGCGCCAAGAACGACATTATGA
CTGCCGACAAGTCCAAAAATGCCCTGGACACCCGAGTAGTCATCCAAGCAGTGCGGTTTC
TGGCCTATCTTCTTGTGGATCAGAATGTGGCTGAAACAGTGGACCCCGACATTGTCAACT
GGGTCGTGAACCAGGGTCTGAGCAAGATCTCCGACTCCAACTGCTCCAAATCTGTCCTTG
GCGGCTACTTGCATCTTCTGAGTCACCACCGAGTGTGCAAGAACGTTGTTACACCGGAAA
CAACGTCCCTGCTGTACACAGAGCTGTCTCGAAGCGAGAAAAAGAGCTCGACGGCACTCA
CAAGCGAAGTTCTGTCAATCTATCAGACTGTGGCGGTCGTTCACCCAGCTAGAGCTCTTC
AACATGCATCTCTCTGGCTTCCTCGAGTTCTTTGTTTGTCCATGGATTGCCGATCTGGAC
TCAGAAGCCAGGCTCTGTCTGTTCTGTCCGATTTCATTATTGCTGCTGGACCCAACAGCA
AGGGATTGACAGCCAAGGCAACCCGAATTCTCACCTCTTCCTTCTCTCTCGAGATTGCCA
GAAACGAAGGCGCACAACTGCCTGCTTGGCTCAAAACAAAGGACACACTTGCCGAAACGA
TTCTTCAGGCGGCGGCTGACTGTCCGGCAGAGGACCCCCTTTACGAGCTCTGGGGGCTGA
CCCTGCTCATGGCTCCCATGGACGCCGAGTCATCCATCCATAGTTGGAACATGCTTCCTC
AATGGATGAACGTGCCTGCAACTGCGTCTGTTGTCAATGTCGCTCTTCTTAAGGCATGTA
GATACGTTGTTCACACACACACACGGAAGCATTTGGTCAAGTACCCTGTCGGTCTGCAAG
CACTTGCTACCAGATCAGGCAATACGCTGCTGCTGTGCATCCAGAGCTTAGGCCAGACTG
GAAGCCAGCTGGTGGATCAGCAGTGCCTCTCTCTGTTCAACCAAACACTCAACACACTTT
TGGTTCCTCTTGAAACAAATCAGTTGACTCTGAAGGCAAACTCACTGCTCTGGGACTCCT
ATATTCGACCCACTCTTGCAATTATGAGCGCCAATACTTCTCTGGCCAACGTGGCCTGTG
CCTCTTTGGCGTGCCTCTTGAGATACGACCAAAAGGTCCAGAAGGACAGAGAGCCAGTTT
TCAGCACCAGCATTCGTCAGCTCCTCACATCTTTGTCGCCCAGATGGGTCAAGGCCAACT
ACGACAAAATCATCGACGTTGTCAAAACAATTCCCTTGGATACTTCTGGGCCCAGTTTTC
TGGCCGTCTGGTCGGCACTGGTGAACAACATCTCGCACTCTGCCGCCAGGGAAATCCATC
CCAGCCCGGAAACGTCTGGCTTTGTCATGTCAGCCTGCAAACTACATCGTCACATGACCT
CTAAGACTCCTCTGGACCATAAAGCTTTCTATAGCTCGGTTTTCGCGGTGGCAGGGCTTC
CGCACTGCATCGATAAGGTCATTGAAGGTACTACGCCCGCAGCATACATGTTCGAGACAC
TTGTGGACGCCGAAGAGATCCCCTCCGAGGCGAAGAAGTACCTCCAGTATATCTATTCAC
AGCTGTCTACCGCTGCTCGACGGTTCCAGTTCACCCAGAGCATAGCCAAGGTCGCCCACA
GGCACGAGTCGCTTTACAAGATTGTTCTGGACCACACCGGGGAAGATATCAACGGTCCGG
AGATGTCTAATCTGTCTCCCAAGGGGATCTACACCATTCTGGCTTCCCCCAACAGACCTG
CGTACCCGGACACATGGTTTTCCATTCTCAAATCGGCTACAGAGATGATTCGGAAGGATG
CCTTCCTTGGGTCTACTCAGGAAGTGCTCATTGAACCTCTTCTGCAGATCATTGATGAGT
CGCTACAGCCCCAGGTATGTCTTCTCGGTATTGAGCTGATCGACAAGAAGCCTCGAGGAA
CTTCTTCACCCATGTTCCGATCTCTCACAACCGACATTCCCAAGGACTTCATGCATCTGG
GTGCAGTTTCTTCCAAGCTGGCGACACCGGAGATTGTCAACGCCGTCAGAACGTGTCTGA
ACACTCTACCAGACCATTCCATGCCCTATTTCTTCTACAGATTTGCGCCTGTCGTGATCC
AGGCCATTTCAACTACTCCGGAACAGCACAGGAAGTTTCTGTGCGATAGCATTGTGCGGA
AGCTACGGAACGGGCCCATGTTAACAACAAAAGTGTATTTGGACCTGCTTGTCACCCAGA
TCTTCCCATCTTGGTTCGAGGAGTACCAGGATGAACTAAAGAAGAAACAGGCTCCCTTGG
TTGCGTTTTGGAACGAGTTGCTTGGCAACGACACCCAGATCGTTCTGGACGAATCCGTCA
TGAATATGCTGCTCTTCAAGTTCGTGTCTACTCGCCAGGAGGTGTTCTATCACGGCCAGA
AACTTGAGAAGCCCACACGAGCAGGCCGAAAGTCATCATCTAGGAGCGACGCCAGTCCCT
CTGTATCTCCCAACATGTCTCCCACTAAACGAAGAACAGATTCGCTGGAGTTTGAAGATG
GTCCTCGGCGCAACAAGTCCAGACGACTGTCAGCTTCACCAGTCAAGTCCTCGCCACTTA
GAAGATCTTCTCCTCGTCTGCAGGAGCTTGTCAAAGTCGAGTCTCAGATACGAGACGTGG
AGGTTGGCCGGTGTGTTGGAGGGTTGGATGATCTGGCACTTCAAACCGATCAGGCTGTTG
ACCACCTAAGTGAACTCGAAGGTGTGACTGCCAGAGAAATTGAGCAGATTGAATCGACTC
TCATTGGAGCTCTTTTCAAGTTGAACCAGCTCAAAAAGAATATTGCATAGACTAAATTAA
TTATTCATATTAGAGGC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E22605g_CDS-001

Protein length: 1195 aa.
Product: Conserved hypothetical protein

>YALI0E22605g_CDS-001 MVGNFRTRSRNAHRKTQVEEVAEVIEVEESDSDQDMEVEEETEEKEEDEDEDAEEGEEDA
EDEEDEAEGEEEIEVEEAEGEEIDVKTDADAEAVDDNSSCEPSTENEEESDRSRGTETEE
EEPCEAAETKPKPIKTTNGTSKPSSEAITPKKKVSFTFQSTPNTPTSTGGILKRNGQPLD
QKMTRENLKSALANATRKLTQTDQLGGPDDSGFGDGGQRFSIYSSLNSFLRVDVSQDDMK
SLASHARVLSECAKNDIMTADKSKNALDTRVVIQAVRFLAYLLVDQNVAETVDPDIVNWV
VNQGLSKISDSNCSKSVLGGYLHLLSHHRVCKNVVTPETTSLLYTELSRSEKKSSTALTS
EVLSIYQTVAVVHPARALQHASLWLPRVLCLSMDCRSGLRSQALSVLSDFIIAAGPNSKG
LTAKATRILTSSFSLEIARNEGAQLPAWLKTKDTLAETILQAAADCPAEDPLYELWGLTL
LMAPMDAESSIHSWNMLPQWMNVPATASVVNVALLKACRYVVHTHTRKHLVKYPVGLQAL
ATRSGNTLLLCIQSLGQTGSQLVDQQCLSLFNQTLNTLLVPLETNQLTLKANSLLWDSYI
RPTLAIMSANTSLANVACASLACLLRYDQKVQKDREPVFSTSIRQLLTSLSPRWVKANYD
KIIDVVKTIPLDTSGPSFLAVWSALVNNISHSAAREIHPSPETSGFVMSACKLHRHMTSK
TPLDHKAFYSSVFAVAGLPHCIDKVIEGTTPAAYMFETLVDAEEIPSEAKKYLQYIYSQL
STAARRFQFTQSIAKVAHRHESLYKIVLDHTGEDINGPEMSNLSPKGIYTILASPNRPAY
PDTWFSILKSATEMIRKDAFLGSTQEVLIEPLLQIIDESLQPQVCLLGIELIDKKPRGTS
SPMFRSLTTDIPKDFMHLGAVSSKLATPEIVNAVRTCLNTLPDHSMPYFFYRFAPVVIQA
ISTTPEQHRKFLCDSIVRKLRNGPMLTTKVYLDLLVTQIFPSWFEEYQDELKKKQAPLVA
FWNELLGNDTQIVLDESVMNMLLFKFVSTRQEVFYHGQKLEKPTRAGRKSSSRSDASPSV
SPNMSPTKRRTDSLEFEDGPRRNKSRRLSASPVKSSPLRRSSPRLQELVKVESQIRDVEV
GRCVGGLDDLALQTDQAVDHLSELEGVTAREIEQIESTLIGALFKLNQLKKNIA*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG