YALI0E19382g

Overview

Description weakly similar to uniprot|P46678 Saccharomyces cerevisiae YNL039w Transcription factor TFC5 TFIIIB
Locus type CDS
Locus tag YALI0E19382g

Location

Species Yarrowia lipolytica Positions 2311174..2313238
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 2065 (nuc.)
Previous locus YALI0E19360g Next locus YALI0E19404g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E19382g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E19382gYALI0E19382g_mRNA-001YALI0E19382g_CDS-001

Nucleotide sequence

 

>YALI0E19382g
ATGTCTTCTGTCGTGAAAAAGGGCACCAAGCGGTTTGTTCCCAAGGTCCAACCGCGGTCT
GGCCGTCGAAGGCTGTCGTCTGTGACTCAAAAGCCCAGCGCAGCGGCCACCAAGCAGCTC
AAAGAGGCCGCGTCCAAACTAGTATCCAATGAAGAGGCTATTGCTGAAGAGGAGGTGACT
CTTCCTGCCACTCCCCAGGCGTCGCAGAACGTCCCTGCCACCGAAGAGACCTCCGAGTCG
TCTCAGCCTGCTCTCAGACTGCACCCGCGACCTCGAGCGCGAATCTCAGCCACCCTGGCG
GAACGACCTGCCCTGGCCTCTCGTCTAGAGACACAAAGGGAGGTGAGTGGCCTGGCGTCT
CCTCCCTCGTCCCAGGTGACCGAGGAGTCCACCACTGTTGTTCGGTCGTCCGGGTTTGCG
GTTGTTAATAAGACGATTACCGAGGGCACCACCACCACGACAACCACCGTCACGAGTGTT
AGGTCCCCCACTCTCACACGAAGTGGCAAACGAAATGCAGAGGAGATTTCTGGGTCCAGT
TCGCTACGATCGACCCAGCGAGGAGAAGACGAGGAGGCCGTGGCTAGCAGTAGTGGAACT
ATGGACGGAGTCACCACAGATGTGTTGGTGTTGAGAGATAACGCCGCCGAAGAAGAAGGG
TCGTCTGCGCCCATCACACACATTTCTGTGGCTGGACGAGCACGCAAGGGTCCCTCGGGT
CCTCTCCTTCCACCTCGAAGACTTCCCGATAGCGCCAACAAAATGTTTGATGCCGAAACA
TTGTATCTTGTTTCTGGCCGAAGCAAGCCATCCATCTTTATCGACAACCCCGAAGAGTGG
ACTTTGGACCCCGAAACGGTCACCATGGCCCAGTTGTGTTCCGATGTGCGGATGGGCAAG
AGTTGTGCGGAGAATGACCAGGCGGTCAGGCATAAGGCAGCTCTGGAACGTCGACGGGAC
AACTACCGACGTGCCAAAAAGTGGGTTGAGGAGAGCCGCGAGGGAGCGCCCAACTTGCGG
TGTAATCTGGATATGGAGGGTAACGAACTACCTGTTCCAACTCTGGAAGAAGCCCTGGCT
TACAATCCCAACTACGTGCGACCCAACGAGGGAGTTCGAGACGACGGCTTTGAATACATC
AAGGCCGAGGGTATTCCTCTTGATATGGCCGCTTTGTTTGACGAGAATGACGAGGAGCAG
GAGAAAAAGAAGGGGGCCAAGCCCAAGAGCGAGTTGCGTGCCAAACAGGACATGGCTGTG
AAGGCGTTGGACAGTGCGCCAAACCGAAGAAACAAACCCGAGCTGAAGATCAAGGGCGGA
AAGTTTGTGGTGGACCAGTCTTCCACTGTTGTTGATCGTCATGAACATGTAGAAGCAGGA
CGTGATCAGAGAGAGGTTGAAGAGATTGTCAAGGACTTCTCCAGGCCCACTACTTCCGTC
ACTCACAGGCGAAACGAAAAGGCCGCCCGATGGTCCGCAGAGGAGACTACGCGCTTCTTC
ATCAAGCTCAGTGAATGGGGCTCCGATTTCAACCTCATTTCGCAATTCTTTCCCGGTCGG
ACTCGACGCCAGATCAAAAACAAGTTCAAGCTGGAGGAACGCAACAACCCGACCAAGATC
CACCTCGCTCTGGCTCGAAAACTGGACATTTCCATCGATCAATACAAGACCAAGGAGGGC
TCGTCAGTGCTCGACACAGCCAAGGAGGTTGAACGCAAGCTGGAGATGATCCGAACGGAG
CACGCCGAGCGAATGAAGCGAGAAGAGGCCGCAAAGGCTGCCGCTAAGAAGGCCGACCGA
GCCCAGGCTCTCGAGAAGGAGAAACAGATTGTGTCTGGTCATGACAAGAAGCTTACTCGA
GGTCAGCGAGCCAAGAGACTACGGAATAATGAGGAGGTCATTGGCGAGCTCCCCGTCAAG
CCGGAGAGGAGGTAGAGACGCCGTCACCAGACGGAGTCTGGATAGACTATAGTGTTATTT
ATTGTATTTATGAGACTGGAGTATGTATGTACAGCATGTACATACTGCTCAGCCGTTGGG
ACGATGATGTTCCTGCGGATCTAGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E19382g_CDS-001

Protein length: 645 aa.
Product: Conserved hypothetical protein

>YALI0E19382g_CDS-001 MSSVVKKGTKRFVPKVQPRSGRRRLSSVTQKPSAAATKQLKEAASKLVSNEEAIAEEEVT
LPATPQASQNVPATEETSESSQPALRLHPRPRARISATLAERPALASRLETQREVSGLAS
PPSSQVTEESTTVVRSSGFAVVNKTITEGTTTTTTTVTSVRSPTLTRSGKRNAEEISGSS
SLRSTQRGEDEEAVASSSGTMDGVTTDVLVLRDNAAEEEGSSAPITHISVAGRARKGPSG
PLLPPRRLPDSANKMFDAETLYLVSGRSKPSIFIDNPEEWTLDPETVTMAQLCSDVRMGK
SCAENDQAVRHKAALERRRDNYRRAKKWVEESREGAPNLRCNLDMEGNELPVPTLEEALA
YNPNYVRPNEGVRDDGFEYIKAEGIPLDMAALFDENDEEQEKKKGAKPKSELRAKQDMAV
KALDSAPNRRNKPELKIKGGKFVVDQSSTVVDRHEHVEAGRDQREVEEIVKDFSRPTTSV
THRRNEKAARWSAEETTRFFIKLSEWGSDFNLISQFFPGRTRRQIKNKFKLEERNNPTKI
HLALARKLDISIDQYKTKEGSSVLDTAKEVERKLEMIRTEHAERMKREEAAKAAAKKADR
AQALEKEKQIVSGHDKKLTRGQRAKRLRNNEEVIGELPVKPERR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG