YALI0E15620g

Overview

Description similar to uniprot|P32908 Saccharomyces cerevisiae YFL008w SMC1 chromosome segregation protein
Locus type CDS
Locus tag YALI0E15620g

Location

Species Yarrowia lipolytica Positions 1868106..1871953
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 3848 (nuc.)
Previous locus YALI0E15598g Next locus YALI0E15642g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E15620g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E15620gYALI0E15620g_mRNA-001YALI0E15620g_CDS-001

Nucleotide sequence

 

>YALI0E15620g
ATGGGCACCCTCAAGGCTATTGAGCTGTGCAACTTCAAGTCGTACCGTGATACGCACCGT
GTGGATCTCGGTGACTCGTCGTTCTCGGCCATCATCGGCCCCAACGGTTCGGGTAAGTCC
AACATGATGGACGCCATCTCGTTTGTGCTCGGAGTGCGGTCTTCGCAGCTCCGATCCACC
CAGCTCAAGGACCTCATCTACCGAGGCCGAATCATGCGTGGCGAGGAAGTCAGCTCGACC
CAGTCTCAGGAAGCCACGTCGGCATACGTTCTGGTGGAGTACGAAAAGTCAAATGGAGAC
CTACTCAAGCTCAAGCGAACCATCACACCCTCGGGCACGTCTGAGTACCGAATCAACAAC
AAGGTCACGTCGTCAGGCGAATACAATGCCACCATGAAGAAGGAAAACATTCTGGTCAAG
GCCCGAAATTTCCTGGTCTTCCAGGGAGATGTGGAGCAGATTGCCAGTCAGTCGCCTCAA
GACTTGTCCAAGCTGATTGAAATCACCTCTGGCTCCATCGATCTCAAGCCCGAATACGAC
CGTCTCAAGGAGGAGCTAGATGTCCAGACTGAGCGAAGCAACGCAGCCTGGCAGCGACGA
CGTACCTACAACGCTGAGAAGAAGCACTACGTTGAGCTCAAGGACCGTTACGACGCGTAC
ACCGCCAAGGCCGCAGAGCGAGACGAGGCCGTTGTGAAGCAGCAGCTGTGGAGACTGTGG
CAGGCCCAAAAAATCGAAGATGAGGCCCGAGACCAGATTGAAGGTGGAGACGCTGCTATC
CAGAACGCCGAGGGGGCTGTTCAGGAGGCTGCTCAGGAGGTGGAAAACGTGGCTGCCAAA
TATGCCAGCGACAAGAAGCGGCTGCTCAAGCAGGAGCGTTCGGCAAAGAAGCGAGCAGAC
GTCATTCTGGAGCACAAGCAGCAGCTCGTGCCTGTGGCTGAACGTATTGCTGTGGTGTCC
GGCAACATTTCGCGTCACGAGGCTCGGTACGGCACTGTCGAGGCTGACTTACTTCGACAC
CAGGACGAAGTCAAGCAGACTCGAGGCTCTCTCAAGATGGTTCAGGATGCCTCCAGTGAG
TTTGAACGAGATCTGTCATCGAAGCAGAAGGAGTCAGGCGGAGTTATTCGAACTGATGAG
GACGCGGCCGAGTATAGCACGCTGAAAAATGAGGTGCACAAGCGGTCGCTGGCTGAGCAG
GCTGAGATTGAGACGGTGAAGCGAAAACTCAGACCTGTTCTGGACCATAAGCGAGCTCTG
GAGCAGGCACAGGAGGACTCGGAACTCAAGGTCAAGGAGTTTAAAAGCGAGTTTGGCGTC
TACCAGACCCAACTGAAGGAAGCTGAGGAGGTACTCAAGACCCACCAGTCTGCTCTGAGA
ACTCAGAGTGAGTCTCTGGCTCGGGTTGTGGACGAACAGACTACCCGACGACGTGTCGAG
CTGGAGCTTGGCGACAAGCTGGGTGTTGTGGCTAACCGTCTGATTGAGCTAAATGCGGTC
AAGCGACAGACTGAGCGAGAACGACGACTTAAAGAGACTGTTGCCAACCTGAAGCATGTT
TTCTCGGCACAGAAGGTCCACGGTCTCGTCTACGACCTGTGCAAGCCCAAGGAGAAGCGA
CACGATCTTGCTGTGGAGACCATTCTCGGTAAGGACATTGATTCCATTGTTGTGGACAGT
TTCAAAACTGCACAGGACTGTATTGCATACCTCAAGGAGCAGCAGGGCGGTCTTGCCTCG
TTCATTCCCCTCGATACTATCAAGGCCATGCCTGTCAACTCGTCGTTGCGGTCGCGTCTT
CGTGGGGCTGTACTTGCCATTGATGCCATTTCCTTTTCGTCTCAGTACGAACGGGCTTTC
CAGTACGTTTGTGGCTCGGCCATTGTGTGTGACGACCTTAAGGAGGCTAAACGCCTTGGA
TGGAGCCTGAATGTCAAGGCTGTGACCACCGATGGCTCCGTGATTCACAAGGCTGGTCTT
ATGACTGGTGGTACTACCCAGAAGGGCCACCATGGCGGCAAGCGAGCATCCAAATGGGAC
GAGTCTGAGGTTACAAAGCTCCAGGCAGAGAAGGATGCTCTGGTTTTGGAGCTACAGACT
GTTGGTCGGCAAAAGTTTGACCCCGAGCGTCAGGATACACTGCAGCGTGAGGTTGACAAG
GTGCGACAGGAAGTGTCTGCTGCCCAGAAGCATGTTGCCAGCCTGAAGGACCGTCTCAAG
GATATCAATTCGCAGCTCAAGTACTACAGCGAGGAGGCTGCCAAGAGCAAGAAGCAGATT
GCCAGCACCGCCAGTGATCTCGAAAAGCTCGAGACACAGAAGGCCACCATTCAACAACGC
CTTGACGAAGTCTGGTACACCGTGTTCTCGTCTTATTGCACTCGTGTCGGCGTGACTGTT
GAGGACGTGTTTGCATATGAACAGACCCATGGCTCTCTCTCCGCTGGTGCCGAGCGAAAG
CGGCTCGCATTCTCTCAGCAGATTGCTACTCTCGAGTCACAGCTCAAGTTTGGCTCCAAG
CGTGTGGACGAGTGCAAGGGGCGACTGGCCAAGATTCGACAGTCTATCGATGATGACAAG
GCAGCTGTGGATGGCTGGGAGGCCGATGAGGCCCAGCTGAGAGAGGACATTGGTATTCTG
GAAGAAAAGGCTCGAGCTGAGGCAAAGCAGGTTCAGAAGCTCACAGCTGCCGTTCAGAAC
GCGTCAACTGAGTCCAACGCTGCCAAGGAGCATCTTTCCCGAGCTCAGGGCGTGGTCGAT
AACCTGCGACGAAAGCTTGCCCAGTCTGAGACCGAGCTTGAGACTGCTGCTACTCAGCGG
TACGAGGTTCTGCGAGAGTGCAAGATTGAGGGCATTGAGCTTCCTCTGGTGTCAGGTGAT
CTCGAGTCTGTGCCTCTGGTTGAGGGAGACGACTCGCAAATGGATATCGATATTGAGGTT
GACTTCTCGTCGCTTCCCCAGGGCATTCGAAGACTTGCCGACGATTCTACTCTTGTTTCC
AAGATCAAGGCTCTGCAGGCTGAACTGGAGCGAATCAACCCCAACCTGAAGGCCGTGTCT
CGACTCGAGCAAGTGGAGGCCGAGGGTGCTAGCATCGAAGCTGAGTCCAAGAGAGAACGT
GAGGCACTCCAGGAGCTGCAGGCCCAATTCAGAGAGGTGCGAGACGCTCGATGCGATAAG
TTCAATGCTGCCTTCGAGCACATTTCCGGAGTCATTGACGCTACGTACAAGGAGCTCACT
CGTTCTGATGCGTTTCCTCTGGGAGGTTCGGCTACTCTGACTGTCGAAGATGAGCATGAG
CCTTACCTTGAGGGAATCAAGTACCACGCCATGCCCCCCATGAAACGATTTCGAGAAATG
GAGCTTCTCTCTGGAGGAGAGAAGACTATGGCTGCTTTGGCCCTACTTTTCTCCATCCAC
TCTTTCCACCCGTCGCCCTTCTTTGTGCTTGATGAGATTGATGCTGCTCTGGATAATGCC
AACGTGCAACGAGTCGCCAACTACATTCGGAAGCATGCTGGCAGCAAGTGTCAGTTCATT
GTGATTTCTCTCAAGCGGGGTCTGTACACTCATGGAGAGTGTTTAGTTGGTATCTACCGA
GATCAGGAGGTGAACTCGTCCAAGATTCTTACTATGGATTTGAGATCGTATCCCGATACT
TAGGCTGATGTAGGATTGGATTGGAATGAGTTTTTATTGATGAATTATATATATATTATT
GGTGTTATTCGGATACCTACAAAACTGTAGAGTGAGGTGACGTGTCATGGCATGATCTGG
CATAATCTGAGCACGTCCGAATCTGCTTCATCAGTCGTTTGTAGTTTAATTCGATTTTTT
GATATATT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E15620g_CDS-001

Protein length: 1221 aa.
Product: Subunit of the multiprotein cohesin complex, putative

>YALI0E15620g_CDS-001 MGTLKAIELCNFKSYRDTHRVDLGDSSFSAIIGPNGSGKSNMMDAISFVLGVRSSQLRST
QLKDLIYRGRIMRGEEVSSTQSQEATSAYVLVEYEKSNGDLLKLKRTITPSGTSEYRINN
KVTSSGEYNATMKKENILVKARNFLVFQGDVEQIASQSPQDLSKLIEITSGSIDLKPEYD
RLKEELDVQTERSNAAWQRRRTYNAEKKHYVELKDRYDAYTAKAAERDEAVVKQQLWRLW
QAQKIEDEARDQIEGGDAAIQNAEGAVQEAAQEVENVAAKYASDKKRLLKQERSAKKRAD
VILEHKQQLVPVAERIAVVSGNISRHEARYGTVEADLLRHQDEVKQTRGSLKMVQDASSE
FERDLSSKQKESGGVIRTDEDAAEYSTLKNEVHKRSLAEQAEIETVKRKLRPVLDHKRAL
EQAQEDSELKVKEFKSEFGVYQTQLKEAEEVLKTHQSALRTQSESLARVVDEQTTRRRVE
LELGDKLGVVANRLIELNAVKRQTERERRLKETVANLKHVFSAQKVHGLVYDLCKPKEKR
HDLAVETILGKDIDSIVVDSFKTAQDCIAYLKEQQGGLASFIPLDTIKAMPVNSSLRSRL
RGAVLAIDAISFSSQYERAFQYVCGSAIVCDDLKEAKRLGWSLNVKAVTTDGSVIHKAGL
MTGGTTQKGHHGGKRASKWDESEVTKLQAEKDALVLELQTVGRQKFDPERQDTLQREVDK
VRQEVSAAQKHVASLKDRLKDINSQLKYYSEEAAKSKKQIASTASDLEKLETQKATIQQR
LDEVWYTVFSSYCTRVGVTVEDVFAYEQTHGSLSAGAERKRLAFSQQIATLESQLKFGSK
RVDECKGRLAKIRQSIDDDKAAVDGWEADEAQLREDIGILEEKARAEAKQVQKLTAAVQN
ASTESNAAKEHLSRAQGVVDNLRRKLAQSETELETAATQRYEVLRECKIEGIELPLVSGD
LESVPLVEGDDSQMDIDIEVDFSSLPQGIRRLADDSTLVSKIKALQAELERINPNLKAVS
RLEQVEAEGASIEAESKREREALQELQAQFREVRDARCDKFNAAFEHISGVIDATYKELT
RSDAFPLGGSATLTVEDEHEPYLEGIKYHAMPPMKRFREMELLSGGEKTMAALALLFSIH
SFHPSPFFVLDEIDAALDNANVQRVANYIRKHAGSKCQFIVISLKRGLYTHGECLVGIYR
DQEVNSSKILTMDLRSYPDT*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG