YALI0E13299g

Overview

Description similar to uniprot|B6K0B4 Schizosaccharomyces japonicus SJAG_01308 U4/U6 X U5 tri-snRNP complex subunit Prp38
Locus type CDS
Locus tag YALI0E13299g

Location

Species Yarrowia lipolytica Positions 1604899..1605581
Strain CLIB 122 Strand Antisense
Chromosome YALI0E Total length 683 (nuc.)
Previous locus YALI0E13277g Next locus YALI0E13321g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0E13299g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0E13299gYALI0E13299g_mRNA-001YALI0E13299g_CDS-001

Nucleotide sequence

 

>YALI0E13299g
ATGGACACCTATATCACCGACAGGGGCATGGTGCACGGCGCACTGTCGATTCATGGAATA
AACCCGGCGCTACTGATTGAAAAGATCATCAGAGAACGCATCTTTGAAACACTGTACTGG
AAAGAGCTGTGTTTCAATCTCAATGCCGCCACTCTGTGTGATCGAGCAGCAACATTGACG
GCCATTGGAGGCCAGTATGCGAATCAAAAACCGACGCCGTTTTTGTGTCTGGTCTTCAAA
CTGCTCCAGATCCAGCCCAGCCACGACATTATCATGGAGTACTTGAACCAGAAGGAGTTC
AAGTACCTGAGAGCGGTGGCAGCCTTCTATATTCGGCTGGCATACCCCCCCGTGAAAATA
TACACTCTTTTGGAACCACTTTTAGGAGACTACCGGAAACTGCGGTTCAGAAACATGGGT
GGCGTGACTCTGACGTACATGGATCAGTTCATTGATGATCTGTTACACGAGGAGCGAGTG
TGTGATATTGCATTGCCTCGACTGCCTAAACGACTGACCCTCGAAGATGCTGAGCAGTTG
GAGCCCAGAGAACCTCTTATTGACGTTAGTGAGAGCGAAAGCGAGGAGAGTGAGGAGGAG
AGTCAAGATGAGGAAAGTGAAGAGGAAGGGGAAGAAGATGATGAGTAGCATAACTTGTAA
TAACATTTATTTATTGTATAATG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0E13299g_CDS-001

Protein length: 216 aa.
Product: U4/U6 X U5 tri-snRNP complex subunit, putative

>YALI0E13299g_CDS-001 MDTYITDRGMVHGALSIHGINPALLIEKIIRERIFETLYWKELCFNLNAATLCDRAATLT
AIGGQYANQKPTPFLCLVFKLLQIQPSHDIIMEYLNQKEFKYLRAVAAFYIRLAYPPVKI
YTLLEPLLGDYRKLRFRNMGGVTLTYMDQFIDDLLHEERVCDIALPRLPKRLTLEDAEQL
EPREPLIDVSESESEESEEESQDEESEEEGEEDDE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG