YALI0D26862g

Overview

Description similar to uniprot|Q04673 Saccharomyces cerevisiae YLR005w SSL1 TFIIH
Locus type CDS
Locus tag YALI0D26862g

Location

Species Yarrowia lipolytica Positions 3574839..3576446
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1608 (nuc.)
Previous locus YALI0D26840g Next locus YALI0D26884g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D26862g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D26862gYALI0D26862g_mRNA-001YALI0D26862g_CDS-001

Nucleotide sequence

 

>YALI0D26862g
ATGGACGACTCGGACGACGACTACATTGAAAACATTAGTGGAGACGAGTACCAGGGTGCC
CCTCGGCGGTCGCGACGAAACCAGGCCCCCAAGGGCGCCGGAGGCTCGGTGGAGAACATG
AAGATGGCCAATGGAGGATACTCATGGGAAGACGAATACCATAGATCTTGGGACGTCGTG
CAAGAGGACGAGGGAGGATCGCTGGCAGGCTCGGTGGCGGGTCTTGTGGAAGCAAGAAAG
AAACGACACATCAAGGATGCAACTCCGTTCCAGAGAGGTATCATTCGAAACCTGATTTTG
GTGCTCGACTTTTCGTTTGCCATGAAAGAGTCCGATCTCAGACCAAACAGGTACCAATTT
GTCATTAACCATGCCATTGAATTCGTAACCAACTTCTTCGACCAGAATCCCATTTCTCAG
CTCGGAATTCTGGGCATGAGAAACGGACAGGCAATCAGCATATCGACATTGGGCAGTAAC
CCCAACGACCACATTAACGCCCTGACGGCAGCCAAAAAGCTCGAGCCTCAAGGTGATCCA
TCTCTTCAAAATGCTCTTGAAATGGCTCGAGGTCTGCTTTTCCATGTGCCTTCTCATTGC
ACTAAGGAGGTACTGGTTGTTCTGGGTGCCTTGTTGTCGGCTGACCCAGGAGATATCCAC
GTAACCATCGACAAGCTCGTTATTGACAAGGTCCGAGCCCGAGTCATTGGTCTGGCGGCG
CAGGTGGCGATCTGCAAGGAACTGTGTGTCAAAACCAACTTTGGAGACGCTTCATACTAT
GGTGTCGTGCTGAACGAACAGCATTTCCAGGAGCTCATGGACGAGGCTACTACACCCTTG
GCAGAGTCACAACAAAGCCAGAGCGCCAATCCAGCATCCCTGGTGCTCATGGGATTTCCT
TCAAAGGTTTCAGAAGCAGCTCCCTCTCTTTCGGCCTCCGATGCAGCTCTCACACAAGGT
GGATACGTCTGTCCGCAATGTAAGGTCAAGGTGTCTTCACTCCCCACAGTCTGCCCCTGC
TGTGGTCTCACACTTATTCTGTCCACCCATCTGGCCAGATCGTATCACCATCTTTTCCCC
CTGGCTCCATTTATTGAAGTCCCCTGCAAGAACGCACACAAGTCTGAATTCTGTGCAGGC
TGTCAATCCAAGTTCCCAGTGGTGGCAAGAGATGCAAAAAACATCCAAGCCGATGGCTCC
ATGACGTCACGGTATGAGTGTCCCACCTGCCACTCTCATTTTTGCATCGACTGTGACGTC
TTCTGCCACGAAATTCTACACAACTGCATTGGCTGCCAGGCACGCAGCTACTCTCTCTAC
CAGGTGGTGGTCACCAAACACAAGGATGCAGCTCCTTCTCTTAAGCTGGTGATGAAGCGG
CCCGATCCAGACGGAGAGGAGAGCTCTAGACCAGTCAAGGTGAGGGTAGTTAATGATAAC
GAGGGTCCAGCTTGGAATGAAGGAGGACAAGCTCCTACCTGGGGGGAGTAATTACAAATG
AACAAGGCTATAAATCACTGGGTGCCTTCTCTTTCGGGCACATGTATACAATACCAATAC
GACATAGATACATAATTCATTTGAATCGACACAAACGTATTTATTTTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D26862g_CDS-001

Protein length: 497 aa.
Product: Subunit of the core form of RNA polymerase transcription factor TFIIH, putative

>YALI0D26862g_CDS-001 MDDSDDDYIENISGDEYQGAPRRSRRNQAPKGAGGSVENMKMANGGYSWEDEYHRSWDVV
QEDEGGSLAGSVAGLVEARKKRHIKDATPFQRGIIRNLILVLDFSFAMKESDLRPNRYQF
VINHAIEFVTNFFDQNPISQLGILGMRNGQAISISTLGSNPNDHINALTAAKKLEPQGDP
SLQNALEMARGLLFHVPSHCTKEVLVVLGALLSADPGDIHVTIDKLVIDKVRARVIGLAA
QVAICKELCVKTNFGDASYYGVVLNEQHFQELMDEATTPLAESQQSQSANPASLVLMGFP
SKVSEAAPSLSASDAALTQGGYVCPQCKVKVSSLPTVCPCCGLTLILSTHLARSYHHLFP
LAPFIEVPCKNAHKSEFCAGCQSKFPVVARDAKNIQADGSMTSRYECPTCHSHFCIDCDV
FCHEILHNCIGCQARSYSLYQVVVTKHKDAAPSLKLVMKRPDPDGEESSRPVKVRVVNDN
EGPAWNEGGQAPTWGE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG