| Description | Ylli, ENA|AJ319752 Yarrowia lipolytica LINE retrotransposon Ylli |
|---|---|
| Locus type | mobile_element |
| Gene names | Ylli_gag, Ylli_pol |
| Locus tag | YALI0D26444t |
| Species | Yarrowia lipolytica | Positions | 3515520..3522023 |
|---|---|---|---|
| Strain | CLIB 122 | Strand | Sense |
| Chromosome | YALI0D | Total length | 6504 (nuc.) |
| Previous locus | YALI0D26411g | Next locus | YALI0D26466g |
Here is a representation of the structure of the locus YALI0D26444t oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :
By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.
>YALI0D26444t
AATCGAGCGCGACCAGAAAAAACGTTCACCATGGAAACAGCGCAAGCCCAAGCTTCGGCG
GGTAACTCCTTGGGCGCTCCGAACCCCCCACCTCCTGATTTATCGCGAGGTGATGGAGCC
ACCTCAACCGAAACCCCCAACCAAACCGACATTGAAAAAATCCAAAAAAACGACAAAAAC
GATGAAAACAACAAAAAAAACGACAAAAACGACAAAAACGACAAAAAAAACGACAACAAT
ATCACCCTCAACGCCTGGAAGAGCAAGGCCGAAGTCAAGGCTCTCCTGACATCGAACCCC
TCCACACTCAAATTCAACCTCAACAAGGAGCGAATTTCGGAGCCCCTTGCGGCGCCGAAT
GGTAGGCATACCTCCGGCCGTTTCAACGTGTCCTATGTAGCCAGCAAGGAAAACTTCTTC
CGAAGAGCTCTTGACCGCTCCGCCACCCCTGATTGGAATCTTCCTATCTCCATGTTCCTC
GAGCACCTCGATAACGCCGCTGAAGTCGACGAGAAGGACACCATCAGTGTCCTCGAGGGC
GTCATCGAAAAGTTCGACGAGATCAAGGGTCAGGTTGGTCTGGCGGAGTTTGACCTGTCC
AGGCACAACCTAGACATCGTCCCCCACCTGATCGACCAGATTAACTTAGAACAGGACCCT
GAAGACTGCTACCAAGTGGGAAATGGTTGGCACTACCTGACGTCGGACGCCCTCACTGAC
CCCCACGAACAACGAATGGCTGTCATTCTGGAGACAGTTAGTCTCATTGTTGAGGCCAAT
ACTCAAGATTATCGCATCATGAGGAAGGGCTCGGCTAACCCTGCTGGACGAAGAGTACTT
TACTACTTCAACCTACCCTCGTACATGAAGATGGAGCGTCAGACGGAGGATGCTTTCAAG
ATCCACCTCAACGCTATTCTCAACCAGTTCGACGTAGACATTGATCAGGCCATTCCAGGT
TCCTCCCTCTTGAGTGGCACCCTTCTGATGACCTCTGCCAACCATCAGAACATCTCGGGT
CCTGTGATCGCAGTTCGTGCTCTCCTAGGCTCCACCCTGCCCCAGACCATCCCCGACTTC
TTCGTCAACCTGGATCCCACCAAGGCTAGGCTTACCGGCTCAAAGTTGATCAAGATGCAC
TTCGCCAACGGCGATAACATCTGTGTTAAGTGCAAGAGCACTAAGCACATCCGGGAGGCC
TGCCCCGAGAAAGACATGGTCACTCCCAAGATCTTCCGCACCCGCGCTCACCAGGGTACC
CTCCCACAGAGAGGTAAAGCCCTTGCTTCCATCCATGCCCCATCCACCGTGGAGCCCCCG
GTCCAAACTCGCAAGTTCCACCACACGCCTGCTACTCACCAGTGGGAGACCGTCGGCACT
AAGTCCCCTAGACATAGACGGACTCGAGACACGTCCCCCCAACCCACCGGTCAGAAGCCC
CTCCGATCTTACTACAACTTTGAAGTCTTGAGCGACAAAACCGGAGAGGACACACCCGAA
GAGACCGAGCAAACTAACCAGCTGCCCTCTACGAACCAGCAGCATGGAACTCAGAATCTA
CCCATCAACATCCCCGCCTCCGAGGAAGACACAGTTCCCGACGACCAGGAAACGGAACCG
GCTGACGTATCCATGAACGGCTTTGACGCCCAGCCTGACGCACTTGCTCACCCTGAAGTA
GCCCCTGATGTCACCCAGTTTCTTCCCCCCGCTACCCCGCTTAACACCGAGGCCACCAAC
AACGGCCTTCCCCACGACCACACCAGTCCCAACACGACCAACCAAACACAACCCCCCCCC
GGAAGTATCCACGAGGGCCGACCCCGAGGAGGGCACACCACCTCCAGTTTCTCTGGCGAG
CCCTCTCACACCACGCTCGGCAAGAAGCACATTGCGGTCTTCCAGACCGCCTCGAGCGAG
GTTCCGGTGCAAATCCTGAACCCGGACAGGTCGGAGAACAGACTCTGCTGGCTGCCTTCT
CAGGAGGTAGCAAAGTTCATTGACGGGAGGTGCCCGACATTCCTGTCTACATGCCACTTC
AAAGTTTTCCACGATGGTGCGACACTCAGCTCGGTAGACGAGATTGTAGAACCCCCGAAC
AGTCCCCCGAACCCCCCTAGGGTGACCACTCTCCATGAGGTGGACACAATGCTCCGACCG
GGGCAGAACCAGTAAGCATGTCTTTCACCTCTACTACCACCCCTTCTAAAGCCCCATGTA
AGAGCACCCAGGCCAAAATGAAATCTCCGAATGTTAAAGTCATCACGGCTAACATCGGCG
GTTTTAAGATGGCGGAAGCGCTTAACCGATTACCCGACACCATTGTAAACATTATTCGAA
CTACTCACTACCCCGATCTCGTCCTTCTTCAAGAGACGAACTGGGTGGACTCCTCCCTAC
AAACCGCTCAACAAATCATTTCAAACTCGCCCTACCCGGGGGGCAGACACTACACCCTCC
TCGGCTCCACAGCTGGTGTTTCTAATAGAAGCGTCGGCGTGGGGCTAGTCTATTCCGACA
ACGTCACCATCACAAACTTTACAACAGTTTTTGAATACTTCCCAGCCCTAGACAACAGAC
TGTGTTTGGCCGACGTGCACATCAAAGGCACCGACAGACACCTATCGCTGATCAACGTAT
ACGCACCAAACGAGCAAGGAGCCTCCCCCTTCACTAACCGGCAGTTCTACCAGTCACTAG
ACGACTATCTACGCCTCCATCCCTGCCAATACCCCCTGATAGCGGCAGGCGATTGGAACG
CGGTCGCCTCCAACGACGGCAGGATTGGCGAAAAAGTGACGACTCACCTTAAGGACTTCT
TAGCTAACTGGGACTTACTAGACACCTACACTCTAATCAGCAAACACAGAAAAGGCCTTT
ACACTCACACCAACAACAGCCGCGGAGCTGGCAGGCGCCTGGATCAGCTGCACATCTCTT
CGACACTCTCACAGTGGATCAAATCCACACAACTGGTAACCAACAAGCAGGGTCACAACA
TCACAAAGTCCTCTCACCACGCGGTCCAATTCGTCTTTAACTTTGGCAACCTCACCCAGC
GACAAGACAGAGGCCCAGGCACCTGGAGGATGCCCTGGTGGGTTTTTGACACAGAGTACA
TTGCTTGGCTCAAGTTCCACGTCAAATCCATTCTGAAGCGATATGGTCCTTTGAAGCCCA
GCCTGAAGCTGCAATGCCTGAAAGAAAACATTAAGGTCACCATCCAACAGGAAGCCAAAA
ACCGCGCACTTCGAGATTCCAACCACCCAGACAACAGACGCCGCGAGGCCCTCATGGCAA
CAGCCTCAGACTGGCAAGCCTACCCAGCTAACGAGCCATACCCGATGCTCCATGCTCGGG
TCGAACAATCCAAGCAACAGATGGAGATCCACTCCCTACGGAACCACCAAGGCCGAGTGA
AGACCGACACCTCCTCTCTCTGCGACATCTCAGCTCGATACTTTGACAACATCTTCGACA
GAGCTGCCGATATCAACGACACCGACGACAGCGCCTTTTTAGACCTCTTCCCCGAAGAAA
CCCGGAGGGTGAATACAGCTAACCCAAGCCTGGACTCGTCTTTTACCAAGGAGGAGATCT
TCGATACCATCAAGGCGTCTACGCACAACAGCGCGCCAGGGCCAGACGGCATCCCGTACA
GGTTCTACCGCGACTGCTGGGATGAGCTGGGGGACTTGATGACGGACGTCTACAACGAAG
CTGGAGCCGACTCGCCCATCAGCACCGAACGCAACACCGCTATCATCAAACTACTGTACA
AGTCGGGAGATCAGGCCGACATCTCCAACTACAGGCCTATTTCTTTGATCAACACAGAGG
TGAAGATCTACACACAGCTCATTAACAAAGCCATCCAGAACATTCTTCCGGACAGCATTC
ACGGCGCCCAAAACGGTTTCGTACCGGGTCGACACATCACTAACAATCTCGACACCATGG
ATCATTTTTGCAACGCCTACTCCCAGCTGAACATGGGTTGGGTCGTAGGATCACTGGACT
TCCGGAAAGCCTACGACACTATCAGCCAGAGTTGGGTGATAAAGACGCTTCGAAATGTGG
GTGTCTCGGAACTGATGATCAACCGTATCCTAGCTGTACAACAGAACGCAGTAACGAGAA
TCAACATCAGAGGTGTCCTATCTCGCCCAGTCCGCATCAAGATCGGAGTGAGACAAGGAT
GCCCTCTCTCTCCAACCCTCTTCATCATCGCAGTAGACGCACTTGTGCGTCGTCTGGACC
GAGAGATGTTTGGACTGGCCCCAGGCCTGCCACTATCCCACCACCACACCACTGGGCACA
GGCCGCCACAACCCCCTACTCACCCGGAGGCAGTGGCAGCTGGACACATGAAGGTGTCGG
CTTTCGCGGACGACATAGCGGTGTTCCTCAACAACATCCAGGACGTGGCCACGGTTGGTA
GAGTGCTCTGCCTCTTCCAACGGGTCTCAGGCCTCACACTAAACCCGTCAAAGACGGTGC
TTCAGAAGATCGGCCCCCCCCCCGATTGTTTTGTTCCACTAACCTTTATTGACGCAGAAT
GGCAGCGAACAATTGACGCCACCTGGCCAACCGACAACAACACACGACAGGCCCCGACGC
TCCGGACATCTGACAACATTTTCCGGTACCTCGGAGTACACTTCGGAAATCGCGAAAGGT
TGGACACGCACTACGCTCAGATCAAGGAGGACCTCAAGGAGTCGCTGCGACGCCTTTCAC
TATGGGGTCTCCCCTATTACAGCAAGGCGTGGATGATCAACATCTACTTCTTCTCGAAAC
TGAATTTCCTTGGACCCTACGTCAGCCAGATCGACAACACCTTCATCCGAGAGCTGAACG
AACTAGCGTGCGACAAGATCAACAAATTATCACCCGACAAAACACGCAAAACCTTCAGCA
ATGGTTTCATCCAAACTCCGGTAGGCAGAGGAGGACTGAACCTGCGGGACATGGGACGTT
TCATGGTGTGCCTGAAGGCCGCTCGGGCTTACAGGTTCTTCCATGGCTCATCGCCGGCCC
TTTGGGACTGCACCTTCCAGTTCTACAGCAGAACTCACAGTCTCACACAGGAAAAGCCAC
ACCAGCGCGTCGACTGCCGCTTTCCGACAGGCCAAGCTTGGGGCTACGCAGCCTCCCCCA
CCATGCGAGACGCAATCAGAGCTTCTTTCGAGCTCAACAAGCCCCTCACCGCGGAACATG
CCAACCCTCGAGAAGATCACGAGCCCTCTACAACAGACACAGTTAATCACAGACTCTGGG
AACGAAACCAGGTGAACGTGAGAGCAGCAGAATCTTTCCGGGAAGCGCACGTCGACATCG
CAGCCGCGAGACGATACCATCCGGTCAGAATGGTGTCCACAGCGGAAATCGACCACCTCC
GGTGGAGCATGGGACCACTTACTCTGGAGAACTTCATGTTTCACAAGACCTCGTCTCCCG
ACTTGCCAAACTTCCCACAAACACTTGCACGACCGAAGAAGTGGACTCAACGAAGCGACT
ACGGGGGCATCTCTGACGACATGGTCTGGCAGGAGGTAATGCATGACCTTCGAAAACACT
ACATCGCCGACGCCAACAAAGCACAAGTTCTTCACCTCATGCGGATATCTCGACTTCCGC
TCGTGAAATGGAGATACCCTGACGACCACGTTTTCACCAAGAAGAATCCAGGATGCGGGC
TCTGTGATAAGGCCATCATTCAGGATCTGCACGAGCATATCTTCTGCAAGTGCGAAGTTC
TTCTTTCCATGTTGACCAGGATGAAGATTCCGTCAGTGAACTCTCTAAAGGACTGGATCT
TTACCGAGTCGAAATGTGGAGTACTCCCCTCTTTCCCAGGGCATGTGAACAGTGACGCCC
CCCGGAAACATCAACAAGTCAAGACACGCAAATATCTGCGGGAATTGGCTTATGGGATCT
GGAAGATGGAGAGATCCCTCCGGTACTCAGGGGACGACGCCACCCTGGGACATGTCCAAC
AGGGTTTGCTTCAATTCCTGAAGGAAGCCCAGATGTGTTTCTACGATGGACAACCGCCAG
CACTTCACGATGAGCGAGAGTAGAGACAGTAGCAAGCGCAAAAGGCGGCCGAGACCACCG
AGAGAACAGCGTAGCAGGGCGCGTAGTCACCACAGGGGACGCAGAACCAAACCAATGACG
AAGAAGAACCACAAGGAGACGTTTTCAAAGGCAATGCAAATGAAGAGGGCAATGGAAGGA
TTGAGATTAGAGAACTGGAGACTGGAGTGGCGTTTTCCCGATGAACGAACAAACACGCGA
AGCTATGTGGACCAACATACAACACGGACTGAACCAGGTTTTTTTATGATTTTTTTACTG
GAAATAGGTACGTGCCAAGTTGGACCATGAAACTAAACGTGTTTAATTAGTAATATTCGT
GTAAGCGTACATTCATTTCAAAGGTTATTCTTTCACGGCAAAGTTATAATTAAATGAATG
TATATGCAGAAAAAAAAAAAAAAA
Locus sequence
Up/downstream sequence
Protein length: 715 aa.
Gene: Ylli_gag
Protein length: 1302 aa.
Gene: Ylli_pol
Browse the locus neighborhood with JBrowse:
ATG