YALI0D24123g

Overview

Description weakly similar to uniprot|P49956 Saccharomyces cerevisiae YMR078C CTF18 Subunit of a complex with Ctf8p that shares some subunits with Replication Factor C and is required for sister chromatid cohesion
Locus type CDS
Locus tag YALI0D24123g

Location

Species Yarrowia lipolytica Positions 3170376..3173017
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2642 (nuc.)
Previous locus YALI0D24101g Next locus YALI0D24145g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D24123g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D24123gYALI0D24123g_mRNA-001YALI0D24123g_CDS-001

Nucleotide sequence

 

>YALI0D24123g
ATGTCTCTAGACTGGGGAGGAGGATTGTTTGGGTCCGGGAGCGCACTGGACGAGCTGCAG
CGCGTTGGAACGCGGTCACGTGAACTTCCACGTGACGAGTCCGATATGGAGCTTTCCGAA
GGTTCTGATCTATCCATGTCTGCCGAAGAGGATGAGGGGGAGGGGGAGCGGGGAGGTGAG
GAGGTAGAACCGACCAGCGATCCCATGACCAACCACGTGACCCAGATGTGCGACCTGGAT
AATCACATGACGCGCTTCCCGTCGCCGGCGGCGGAGGAAGATGACTTCATTGCGGAAATG
TTGAGAGCCAACGAACCCAAAGACTTGCCAGCTTCTGCCGCCTCCGCCGCTCCGTCACGT
GATATGCCACGTGACCGCACTTCGCCCACCCGATACATCACGCTCTACTCCGGAATGACC
CTTTCGCGAGCGAAAAAGTACATCAAAACGACCCGGCTCCGAACAATGCAACAGGAGGAG
GAATCGCTGAAGAACCACTACGGAATCGATGTGAGCGGCATCAGACAGAAGCTGGTGGGC
CAAAAATTCGACAGCAGCGAAACTTGCAATACGCCAAATCCTACCGCTGGAGATACCGGA
AATACCCGCCCGAAAACGGCATCTTGCGATACGTCCAAAATTCCGGCAGACGCATTCAGC
GATTCGAGACATCGTGCGGGTCTGCTCGTGTCTGGAATTGGGTCACGGGACGGCCACCTC
TGGGTGGAAAAACTGCGGCCGCAAAAGCTGCTGGATCTGAACGGCCATTCCGACCGCCAC
AAGGACATTTTGTACTGGCTGAGTGAATGGAACTCCTTCATTTTCCAGACTCCGTCGCAG
GCGGTGCAATTCAAAGCCAAGCAGCGGGAAAAATGGCTTAAAAAAAGCGGACGAATCGAA
GATGCTGTCCACGCAGGATCACGTGGGGTCTACGAGGAGCGCGAGGCACGTGACCGCCCC
CAGAAGCGGATCCTGCTTGTGCACGGCGAGCCCGGAACCGGAAAAACCACCGCCTGTGGG
GTTTTGGCCCGGAATTTGGGGTTCAACACGCTGGAGATGAACGCGTCTGACGACCGTGGC
AGCGAAGCGTTCCGACGGGGCGTTTTGGGTCCCATGAGAACCCACTCCGTCACTTCCAAA
GACCGTCCTAACTGCGTGATTCTCGACGAGATTGACGGAGCGGACCCAATCTTCATCGAC
AAGTTGGTCAAGCTCGTGCAGCGCGACGAAAAGGAGGAGTTATGGCATGAGCGGAAAAAC
AGACATAAAAAGACCAGCGCCAAAGACAAACTCAACACCCTCATCAGCCGACCCATCATC
TGCATCGCAAACAACCTCCACGGGTTGCTGTACAAACTCCGGCCGCATTGTCGAATCGTC
AACTACGGCCGACTGTCGCCAGCTCAATCGCTGCGAATCGTGCAAAACGTGTTTCGAACG
GAGATGAAGCTGCAAAAACTCACCTCCAAACAAAACAGATTCCTGGCAGACATCTGCAAC
TCCACCGACGGAGACATTCGACAAGCCATCAACATTCTGCAGTTTGGAACCCCCGAGGCC
GACACGGCCAATCTGGTGGACAAGTCGGCGCTGTGGAACAACATTGTCAGTTCACTCTTC
AGTCACGTGCCCGTGGGCAAAGACCGGGCTAACCACGTGGAAAACTTGTGCCAGAGATCG
CTGCGATGCGGAGAATGGAATAAACTTGTGTTTGGAGCCTTCTCAGCCTACATCACGTGC
CTTTCGGGAGCAGGCAACCTCACCCAACTCACCAACATTGCCAAACTCGATGACTGGTAC
CACCTGTACGACCTCGCCAACACGCTGGGGTCCCGCGACAGTTACCACCCGTATACGCTC
GCGGCCTTCTCGCTGATGTTTGGATCCACCACCAAAAACCACGTGACCAACGTCGAAACC
GACTACTCCCTCACCAACCAGACTCAGACCCAAAAGCTGCGTCTCAACGACATCTACAGC
AACATTCCCGTCGAACTAAGGCGGTATCTCAACAAAGAAACGCTGCTAGATGATCTGGGA
ATGTTCCTGGACACTATGACCCGACAACAGAGAGGAGTCACCCCGGAACAAATGGCGTCT
CTCGCAGAATCTCTCACCTCCCTGGGAGTGTCCCTCAAGAAGGAGAACGTGTACAATGAA
ATCTCCTCCAAGAGGGAAGACGTGTACGTGTTTGTGCCGCCGGTGTGCGACCTGTCACGT
GCCCCGGATGGCCAGCCCCGGGACACAAACTCCGTGTTCCTCGAGTCCCTTTACAAGATC
CTCACCCCGGACCCGACCCTCAAGCGGCCAGGCGAATTTTCCCAGGTGCAACCCAACAAG
AGACACGTGGCGGCACATGATCTGGCACGAGACCCGGATCCGAGGACGCGCGGCGGGCCC
CCGCCATCTTCGTCAACGGCAAAAAAGCCATCCAAGTCGTCCACCCTGCTGGACTTCTTT
ATCAAGGAAACGGTCGAGATCACGCCGTCGCAGGTGGTCCGCAACGAGGCCAAGGAGCAA
CAAGACACGCTGAACACGTGGGTGTCGTACTTTGAGGGCTACTCCAACGCTGTCCGGCGG
GACCTCACCTGGGAGCAGTTGTGGATGGAGTAAGATACAATGAATACAAATGTATACAGT
GT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D24123g_CDS-001

Protein length: 871 aa.
Product: Conserved hypothetical protein

>YALI0D24123g_CDS-001 MSLDWGGGLFGSGSALDELQRVGTRSRELPRDESDMELSEGSDLSMSAEEDEGEGERGGE
EVEPTSDPMTNHVTQMCDLDNHMTRFPSPAAEEDDFIAEMLRANEPKDLPASAASAAPSR
DMPRDRTSPTRYITLYSGMTLSRAKKYIKTTRLRTMQQEEESLKNHYGIDVSGIRQKLVG
QKFDSSETCNTPNPTAGDTGNTRPKTASCDTSKIPADAFSDSRHRAGLLVSGIGSRDGHL
WVEKLRPQKLLDLNGHSDRHKDILYWLSEWNSFIFQTPSQAVQFKAKQREKWLKKSGRIE
DAVHAGSRGVYEEREARDRPQKRILLVHGEPGTGKTTACGVLARNLGFNTLEMNASDDRG
SEAFRRGVLGPMRTHSVTSKDRPNCVILDEIDGADPIFIDKLVKLVQRDEKEELWHERKN
RHKKTSAKDKLNTLISRPIICIANNLHGLLYKLRPHCRIVNYGRLSPAQSLRIVQNVFRT
EMKLQKLTSKQNRFLADICNSTDGDIRQAINILQFGTPEADTANLVDKSALWNNIVSSLF
SHVPVGKDRANHVENLCQRSLRCGEWNKLVFGAFSAYITCLSGAGNLTQLTNIAKLDDWY
HLYDLANTLGSRDSYHPYTLAAFSLMFGSTTKNHVTNVETDYSLTNQTQTQKLRLNDIYS
NIPVELRRYLNKETLLDDLGMFLDTMTRQQRGVTPEQMASLAESLTSLGVSLKKENVYNE
ISSKREDVYVFVPPVCDLSRAPDGQPRDTNSVFLESLYKILTPDPTLKRPGEFSQVQPNK
RHVAAHDLARDPDPRTRGGPPPSSSTAKKPSKSSTLLDFFIKETVEITPSQVVRNEAKEQ
QDTLNTWVSYFEGYSNAVRRDLTWEQLWME*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG