YALI0D22594g

Overview

Description similar to uniprot|P32915 Saccharomyces cerevisiae SEC61 YLR378C Essential subunit of Sec61 complex
Locus type CDS
Locus tag YALI0D22594g

Location

Species Yarrowia lipolytica Positions 2900413..2902573
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 2161 (nuc.)
Previous locus YALI0D22572g Next locus YALI0D22616g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D22594g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D22594gYALI0D22594g_mRNA-001YALI0D22594g_CDS-001

Nucleotide sequence

 

>YALI0D22594g
ATGAGTGGACGTGAGTGACAGAGAGAAGAGAGAAGGTAAAGAGGGAAAAAGGAAAAGAGG
GGGAAGCGGTCTATTTATGTGTTGAAACGATGCGACACAAAACCAACAACACAGGATCAC
ACAAACAGAACGACACAAACATCAAGGATCCAAAAAATAACATCCGACACACACTCCTCA
AAAGCCGATTCCAACGCTGCTTGAGCCCTGACTAACACAGTACGTATGCTCGATCTGGTG
AAACCATTCCAGGCCATTCTGCCTGAGATTGTTGTTCCTGCTCGAAAGGTGAGTATTGTT
GATCGAGAGACGACGATGACAAGTGGAGGACATTGAGGACATTGAGAGAGAGAAATGACA
GGATGCACGGACGAATTCAAGAGATCTTAGTCTCTGATGGTACTGATTGACGATGATCAA
CCCCTGCCCAACATGTGTAACCCCTCAACATGTCCATTTTGAATCAACAACATGGCAAAT
GCGACCGGAATGATACCCGATGTGCTGACGCTAGCGCACTATAGGTGATCAGCGATGGTG
TTGCCGATCCAAACGACCTCAATGGTTGTGTTAGGATCTCATCATCAGACGTTGCCACTG
CAGATCAACTCAGTGCTGTAGCTCCTCTCAAAGCTACTTCCAGGTAAACGATTCTATTGT
ATTTCTGTGATCAACTTGGTTCACGTCAGTCAGATTGTCTCGCTAAGTTGCTTAACTGCT
ACCCTGCTCTCGGTTTCTACATACTAACCCAGCTCCCTTTTTACGACAAAATCGCCTACA
CTGTCGGAATCGCCATCACTTTTTTCATCATGGCCGGCATCCCGCTCTACGGCGCCCACG
CCTCCACCTCAGACCCCTACTCGTTTACCCGAGCCATCTCCGCCTCTTCTCACGGCACTC
TGATGGAGCTCGGTGTGGGTCCCATGGTCACCTCTGGAATCATCTTCCAGATCCTGGGAG
GTTTCCAGGCCCTTAATGTCAATTTTGACATTCGAGCCGACCGAGAGCTCTTCCAGAGCG
GCCAGAAGATCTTTGCTCTTCTGCTCACCTTCTTCCATGCCATCTTCCTCGTCTTCTTCG
CTCAGACTTACGGTACCATTTCAACCGACTCTGCTGTTTCAGAGCTCTCTCTCGGAGCTG
CGGTTCTAATTGTTGCCCAGCTGACCGCCGCTGGTCTCGTGCTCATTCTGCTCGGCGAGA
TTGTCGACAAGGGCTACTCTTTCGGCTCTGGTTCTGGTCTCTTCACCGCTCTGTCCGTCT
CCCAAAACTTCATGTGGCAGAACCTTGCCCTGCTCAAGGTGCACCAGGAGTTTGTAGGAT
CCATCCCTGCCCTGCTCATGGGTCTGTGGAAGAACGGACTGTTCAACTTTGGCGGCTCTT
ACCGATACGTTATTGAGAACTCCTTCTTCCGACAGAACCTGCCCAACCTGCTGCAGCTGT
ACATGTCTGTGGCCGTGTTCATGCTGACCATCTACCTGAACACTTTCCGGGTGGACATCC
CCATCAAGTCGTCGCGAGTGCGATCTCTTGCCACCGCATTCCCCGTCAAGCTGCTTTACA
CTGGCTCTATGTGCCTCTTCCTGCTGTCTGCCTTCTCCCAGAACGTTCTCATCTACTCGC
AGTCTCTTTACGTGCAGTTCCCTGACAACCTCATGGTGCAGGTTCTTGGTAGCTGGGGAG
CTGACGGCTCTCCCGTGGGCGGCATTGCCTATTACATCAGTCCCAACAACTTTGGATACG
ATGTCATCAAGATGGTGCTCTACTCTGTTTACACCATTGTGGGCTGCACTCTCTTTTCCA
AGTACTGGGCTGAGATTTCCGGCTCCGCCCCCAAGGACGTGGCCAAGCAGTTCCAGGCCC
AGTCCATTGTGATTGTCGGCCAGCGAGCCCAGTCTGCTCCCCGAGAGCTGGCCAAGGTCA
TCCCCGTGGCTGCTGCTGTTGGTGGAGCTGTTGTGGGCGCCATTGTGGCCTTCTGCGACA
TTTTTGGCGGTCTTGGAGCCTCTGCCGCACCCATGATTGTCGCCGTGACTTCCATGAACA
ATTATTTTGAGATTCTTGCCCAGGAGGGTGATATTGCTCAGATGGGCAAGGCTTTTGGAA
TGTAGAGTGGGGATTAGAGTAAAAGCCGTATTATGTATTAATAAACGTTTGAATTAGTGG
G

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D22594g_CDS-001

Protein length: 477 aa.
Product: Conserved ER protein translocation channel, putative

>YALI0D22594g_CDS-001 MSGLRMLDLVKPFQAILPEIVVPARKLPFYDKIAYTVGIAITFFIMAGIPLYGAHASTSD
PYSFTRAISASSHGTLMELGVGPMVTSGIIFQILGGFQALNVNFDIRADRELFQSGQKIF
ALLLTFFHAIFLVFFAQTYGTISTDSAVSELSLGAAVLIVAQLTAAGLVLILLGEIVDKG
YSFGSGSGLFTALSVSQNFMWQNLALLKVHQEFVGSIPALLMGLWKNGLFNFGGSYRYVI
ENSFFRQNLPNLLQLYMSVAVFMLTIYLNTFRVDIPIKSSRVRSLATAFPVKLLYTGSMC
LFLLSAFSQNVLIYSQSLYVQFPDNLMVQVLGSWGADGSPVGGIAYYISPNNFGYDVIKM
VLYSVYTIVGCTLFSKYWAEISGSAPKDVAKQFQAQSIVIVGQRAQSAPRELAKVIPVAA
AVGGAVVGAIVAFCDIFGGLGASAAPMIVAVTSMNNYFEILAQEGDIAQMGKAFGM*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG