YALI0D22484g

Overview

Description similar to uniprot|P37292 Saccharomyces cerevisiae YBR263w SHM1 serine hydroxymethyltransferase precursor, mitochondrial
Locus type CDS
Locus tag YALI0D22484g

Location

Species Yarrowia lipolytica Positions 2873107..2874622
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1516 (nuc.)
Previous locus YALI0D22462g Next locus YALI0D22506g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D22484g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D22484gYALI0D22484g_mRNA-001YALI0D22484g_CDS-001

Nucleotide sequence

 

>YALI0D22484g
ATGCAGCGATTCACTCGACTTTCCCGGCCTCTCAACCGAGGCCTGCTTCGAGCCTACGCC
ACCAAGGCGTCGCCCGATACCCAGATGACTCAGCAGACCTTGTACGCGTCCGATCCCGAG
ATCGCAGACATCATCAAGAAGGAAACCGACCGGCAGATCGGCTCCATCACCCTGATCCCG
TCGGAAAACTTCACCTCGCAGGCCGTCATGAACGCCCTGGGCTCCGTCATGCAGAACAAG
TACTCTGAGGGCTACCCTGGCGCCCGATACTACGGTGGTAACGAGTTCATTGATCAGGCC
GAGTCTCTGTGCCAGAAGCGAGCCCTGGAGGCGTTCAACCTGGACCCCAAGGTCTGGGGA
GTCAACGTCCAGCCCCTGTCTGGTGCCCCCGCAAACCTCTACGCTTACTCCGCTGTCATG
GAGGCCGGTGACCGACTGATGGGCCTGGACCTGCCCCATGGAGGCCATCTCTCCCACGGC
TACCAGATCCCCTCCAAGAAGATCTCCTACATCTCCAAGTACTTCAACACCATGCCCTAC
CGACTGGACGAGTCAACCGGTCTCATTGACTATGACACGCTCGCCAAGAACATTCTTCTT
TTCCGACCCAAGGTGCTGGTTGCTGGAGCTTCCGCCTACTCTCGTCTGATCGACTACAAG
CGAATGCGAGAGATCGCCGACTCTGTGGGCGCCATTCTCATGTCTGACATGGCCCACATT
TCCGGTATGGTTGCCGCTGGCGTCATCCCCTCGCCTTTTGAGTACTCGGACATTGTGACC
ACCACCACCCACAAGTCTCTTCGAGGCCCCCGAGGTGCCATGATCTTCTACCGAAAGGAC
GGTGACCGAAACCTCGAGGAGAAGATCAACTTCTCCGTCTTCCCCGGCCACCAGGGAGGT
CCCCATAACCACACCATCACCGCTCTGGCCGTTGCGCTTGGCCAGGCCAAGTCTCCCGAG
TTCAAGGAGTACCAGCAGAAGGTTGTCGACAACGCCCAGGCCTTCTCCAAGGCTCTGTCT
GACGCCGGCTTCAAGCTTGTTTCTGACGGAACCGACACCCATCTGATCCTCATTGATCTG
AAACCCTTTTCCATTGACGGTGCTCGAACCGAGATGGTTCTTGACGGTATGAACATTGCC
GCTAACAAGAACACCGTGCCCGGCGACAAGTCTGCTCTTGTGCCCGGTGGTATCCGAATC
GGTACTCCCGCCATGACCACCAGAGGTTTTGATCAGTCTGAGTTCGAGCAGGTTGCCAAG
TACATTGTCAAGGCCGTCGATATTGCCAAGCGACTCAAGCAGAAGGCTGTTTCCGAGGGC
GTCAAGAAGATCTCCCAGTTCCGGCCCTACGTCGATGCTGATGCCGAGGTCAAGGAGCTC
CGAAACGAGGTCGAGTCCTGGGCCAAGAAGTACCCTTTCCCTATTGATCCTGCTGGATAC
AAATAGTCACCCAAAAAACAACGTCTCAAATATACGAAAATATGGATGTAATAAAATTAA
CAAGCTATCGACAACA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D22484g_CDS-001

Protein length: 482 aa.
Product: Mitochondrial serine hydroxymethyltransferase, putative

>YALI0D22484g_CDS-001 MQRFTRLSRPLNRGLLRAYATKASPDTQMTQQTLYASDPEIADIIKKETDRQIGSITLIP
SENFTSQAVMNALGSVMQNKYSEGYPGARYYGGNEFIDQAESLCQKRALEAFNLDPKVWG
VNVQPLSGAPANLYAYSAVMEAGDRLMGLDLPHGGHLSHGYQIPSKKISYISKYFNTMPY
RLDESTGLIDYDTLAKNILLFRPKVLVAGASAYSRLIDYKRMREIADSVGAILMSDMAHI
SGMVAAGVIPSPFEYSDIVTTTTHKSLRGPRGAMIFYRKDGDRNLEEKINFSVFPGHQGG
PHNHTITALAVALGQAKSPEFKEYQQKVVDNAQAFSKALSDAGFKLVSDGTDTHLILIDL
KPFSIDGARTEMVLDGMNIAANKNTVPGDKSALVPGGIRIGTPAMTTRGFDQSEFEQVAK
YIVKAVDIAKRLKQKAVSEGVKKISQFRPYVDADAEVKELRNEVESWAKKYPFPIDPAGY
K*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG