YALI0D21692g

Overview

Description Weakly similar to uniprot|P29055 Saccharomyces cerevisiae YPR086w SUA7 TFIIB subunit (transcription initiation factor), factor E, in frame stop
Locus type CDS
Locus tag YALI0D21692g
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 2751913..2752908
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 996 (nuc.)
Previous locus YALI0D21684g Next locus YALI0D21736g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D21692g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D21692gYALI0D21692g_mRNA-001YALI0D21692g_CDS-001

Nucleotide sequence

 

>YALI0D21692g
ACATTTCCGAACGGTTTGCAAAAGGAAACGTGGTGTGAAGATTGCGGACTAATTCTTTCA
GACCAAGTGGTCGACACTAGAAGTAAATGGCAAACCTACTCCCTTCCGAAGATGGAACTG
TCGAAGCGGACCCCTGTCGAGTTGAAGAAACTGCCAGTCGAGATTGTGAGTCGCAGCTCC
GTGCCAACATGTCCCCTGGAGCCTTACCCAGTTGCTCGCACTAAGCATCAAATCCTGCTT
CACTCATCAGATGTCAAATCGTCTCTGGCGGTCGTGAGTCTCGCCCTGGACGGAGTCAAT
GGCAACATCTCTGCCCTGTGCAACAGCATCTTGCTTCCCAAGGACGTTTATTACCCCCGC
CAAACCGATTCACACCATTATCTATCAAGACAAAAGGCTCAAGGGCAAGAGAACCGAGGA
CATGAGTGCCTCCATTGTCCTTCTCACCTGCAGAGCTGCTGGAGTTCCCCTCACATTCAA
AGAAGTGTGTGCTGTGACCAACGTCTCTAAACGCCGAACAGGACGCTTTCTGGAGCTTTT
GAAACGCATTCTCAAAGGCACCGACATTATGTCGTAGTTCAAAAACGTCCAAATCAATCC
AGCAGCTCTCCTTCCTCTTACTTATCTCATCTGGGACTCAGTGCCAAGGTGGGCCATCTA
ACGGAAGATATGATCAAACGAGCGACTCATATCCACGTTCTGGACGGCAACGCACCAGCA
TTTGTGTCTGCCGCTCCTCTCTACATGGTCGCTGCTCTATATGATCAGTGTATACGCCCC
GGCGACATTTCAGATAAGACAGGAGTCAGTGAACCCACCATCAGAATGTTGTACAAGCAC
ATATACCAGGTCAAGGAGCAGTTGGTGAATGTTGAGTTGGTGGAAAAAGGGACAGTATTT
TTTGAATGGCTACCGAAATCTGGCCACGGTGCCGGTGTCAGTAAAAAGAGAGAAAAGGGC
AAACAGAAGGAGGGGAAGGTCAGGTTTTTACAAGCA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D21692g_CDS-001

Protein length: 332 aa.
Product: Conserved hypothetical protein

>YALI0D21692g_CDS-001 TFPNGLQKETWCEDCGLILSDQVVDTRSKWQTYSLPKMELSKRTPVELKKLPVEIVSRSS
VPTCPLEPYPVARTKHQILLHSSDVKSSLAVVSLALDGVNGNISALCNSILLPKDVYYPR
QTDSHHYLSRQKAQGQENRGHECLHCPSHLQSCWSSPHIQRSVCCDQRL*TPNRTLSGAF
ETHSQRHRHYVVVQKRPNQSSSSPSSYLSHLGLSAKVGHLTEDMIKRATHIHVLDGNAPA
FVSAAPLYMVAALYDQCIRPGDISDKTGVSEPTIRMLYKHIYQVKEQLVNVELVEKGTVF
FEWLPKSGHGAGVSKKREKGKQKEGKVRFLQA


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG