YALI0D21208g

Overview

Description similar to uniprot|O74999 Schizosaccharomyces pombe Putative DNA excision repair protein
Locus type CDS
Locus tag YALI0D21208g

Location

Species Yarrowia lipolytica Positions 2679088..2680870
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1783 (nuc.)
Previous locus YALI0D21203r Next locus YALI0D21230g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D21208g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D21208gYALI0D21208g_mRNA-001YALI0D21208g_CDS-001

Nucleotide sequence

 

>YALI0D21208g
ATGCGCCACTACAGACACAGACAGGCTGTGACGGGCTCGGGCGAGGTGCGTGGCCCCAAC
TCCGCGCTGACGGAGTTTCTCAAGGAGCAGGGAATCACGCGACGACGAGAGTCTTCCGAG
CCACCTGACGAGGTGGGTCTGGAGGTCGGAGATCAGGGCCAAACGTCTCAGACGGCGATC
GAGCTGTCGGACAATAACACGGACGACTCGTCCGGGTCCAGTGCCGACGAAGACGACCCA
GATATCGTTCGCATCCGCAATCTGGCTCGCCGAAAACGCAACTGGGACGAGTCCGAAGAC
GATCCGGACATGACATCTGAGGAGGAGATCAAGGGAGTCAAGAACCCGGGCCAGAAGGAC
ACGTGTGCGGTTTGCGGCGTCTTGTTTGTGGTGACCGCCTTCTCCCGCAACCACAAGAAC
GACGCCCTCAAGCTGCTGTGCTACGACTGCACCATGGAGGAGGTGAAGAAGGAAAAGGAG
GCCAAGAAGCGGGACCACAACTTGCGAAAGCTGCGGAAAAAACAGGCTGAGGCGCTTCTC
GACCAGAAACAGTACATCCGAGTGCCCAAGCTCCAGGACATGTGTATCACTCTGATCACC
ACCCATATTGACCATGTGGAGGCTCTAGGAGATATCGGAGGCGAAAACAAGAACAAAATC
AGCCGCATCTTATCGAGAAACCGTCGACTGGACTCGGAAACCATGAAGTTCTTTTTCGAC
ACCCAGCTCAAAAACCTCGAGTTCTGGGACTGCTCCAATATCGACTCGGAATCACTCCGA
ATGATTGGCTCCTTCTGTCCCAATCTGGAGGAGTTGGTTCTGGGCATGTGTGGGCGGCTG
CGAAAGGAAGACCTGCTCTATCTGGGCGAAAAGCTCAAGTCGCTGGCCTCTCTGTACATC
GATGGAGCGTTTCTTATTTCTGGAGACACTTGGAACGTCTTCTTCGACATGGTAGGAGGC
GGTCTCAAGGAGCTCACTATCAAAAACAGCCACCGAATCTCCTCGGAAAACATTGTGTAC
ATGTGTGAAAAGTGCCCCAAGCTGGAAAAGTTGGTGCTGAGCAGACTCGAGGGATGCACC
GACCCCATGGGATACGAAATGGCAGCTCTAACCCTGGGAAACCTCAAGGAAATTGAGATT
AGTTATCCTCAAGACGAGTCACTTGTTTCCGATGATCTCATCAGTGGCCTGGTATCTACT
TGCGGTCCCCAACTCAAGTCAATCAACCTCGATGGTTGTTCGGCGCTCACAGACAAGACT
CTAGGCACTCTGCGGGCATGTACAGCTCTAGAGTCCTTGTCTCTGAGTCATGTGGACCAG
CTGACCGACAACGGAGTGGCATCACTGTTCTACCAGTGGGAAAACCCCGGTCTCAGTGAA
ATCCACATGCGCAAGTGCATTGCTCTGGGTGACGATTCGTTCAGAGTGCTTGTGGACAAC
TCGGGACCGACGCTCAAGAGCATCAGCGTCAACTCGTGGGCAGAGATTGGGGTCGACACG
GTGAAGACGGTGTGTAAGAGTCTCCCGGGGCTGCAGGACATTGACCTGGGCTTCTGCAAG
GGTATCAACGACGAGTGTGTGGAGTTGTTGGCGGAAAACTGTCCCCTGTTGCAGAAGATT
GAGGTCTATGGAGACCCGGGAGTGACGGAGAATTGCAAGGTGGGCGACGGTATCAAGTTG
ATTGGCAGGATGAGTGATGTCGTCTAGCATGTGCCGGTGTTGTTTTCCACAAAATGTTTG
TATAATGAGATATTGAAACGATTCAAGTGCATTGTTCTCAAAC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D21208g_CDS-001

Protein length: 569 aa.
Product: DNA excision repair protein, putative

>YALI0D21208g_CDS-001 MRHYRHRQAVTGSGEVRGPNSALTEFLKEQGITRRRESSEPPDEVGLEVGDQGQTSQTAI
ELSDNNTDDSSGSSADEDDPDIVRIRNLARRKRNWDESEDDPDMTSEEEIKGVKNPGQKD
TCAVCGVLFVVTAFSRNHKNDALKLLCYDCTMEEVKKEKEAKKRDHNLRKLRKKQAEALL
DQKQYIRVPKLQDMCITLITTHIDHVEALGDIGGENKNKISRILSRNRRLDSETMKFFFD
TQLKNLEFWDCSNIDSESLRMIGSFCPNLEELVLGMCGRLRKEDLLYLGEKLKSLASLYI
DGAFLISGDTWNVFFDMVGGGLKELTIKNSHRISSENIVYMCEKCPKLEKLVLSRLEGCT
DPMGYEMAALTLGNLKEIEISYPQDESLVSDDLISGLVSTCGPQLKSINLDGCSALTDKT
LGTLRACTALESLSLSHVDQLTDNGVASLFYQWENPGLSEIHMRKCIALGDDSFRVLVDN
SGPTLKSISVNSWAEIGVDTVKTVCKSLPGLQDIDLGFCKGINDECVELLAENCPLLQKI
EVYGDPGVTENCKVGDGIKLIGRMSDVV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG