YALI0D20548g

Overview

Description hypothetical protein conserved in the Yarrowia clade
Locus type CDS
Locus tag YALI0D20548g

Location

Species Yarrowia lipolytica Positions 2607998..2609796
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1799 (nuc.)
Previous locus YALI0D20526g Next locus YALI0D20570g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D20548g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D20548gYALI0D20548g_mRNA-001YALI0D20548g_CDS-001

Nucleotide sequence

 

>YALI0D20548g
ATGACATCACATCACCCCACACACACAACAACAAAGATGCCACAATCCCCCATGTTGGAA
GCTGAGAAACACAAATACAAGCAATTCCGCCCGCCGGTGCTGCAGCTCAACGATGATACG
CCAGAACGCCCTGGCTCGGCCGGATCCAACTCCGTCGAGGCGCCCCTGCCATCTCCCCGA
GCGGCACTTATCAGTGGTCTGAAAAACGCCACCGACCGGCGACAGCAGCAGATGCAGCAG
CAGCAGCAGTTGCAGCACAACTACACTGTGGGTCCTCAGGGCCAGCGGATCTGGTCGCCG
TTCCAGGAGTACCCCGGCATCCAGCGGGTGGGCTCGCCGTCGAAAACAGGCGTGCCGTAT
GGAGGATACAGCGGAGCCGGCTACCCCGGCGGCTCCGGGTCAGGATACAACTCGCCCATC
CGTGTGGGATCGCCCCGCTCCCCAATGTTTGAGGGCGCGTCGTTGGCGTCGCAAGACCCC
AACATGGACGGCCGCACGTCGCCGTCGCCCCAGAGCATGTACGCCCACTTGCAGGCCAAG
CAGCGGGAGTTGCAGGTGACGTCGCTTCTGATTTCGCAGCAGCAGGAGCGGATCCAGATG
GCGCTCAACGAGGCCATCCAGGAGGGCCAGCAGCAGCCCGCACAACCCCAGGTCGCTGGA
GCACCGGGCTCGGCGCCGGGGGGACACAAATTCACACCCACCACGCTGCCGGCCCACCAC
TCGCAGCATCAGTGGCTGCACGAGCAGCTGCTGGCGTCGCCTCTGGATGATTCTTACAGT
CATCAGCACGCTGGTCCACCTCATGGGGGCCATGGATTCAATGCTCCTAGCGGGTTGGGC
TACGGGTTGGGTCCGGGTCGGCCCGCTTCTCCTTCACGGATCCAGAGGCCATCGTCGGCC
AACTTTCTGGCCCATCCCACGCCCGTCACGGCCCAAAATAACCCCTACATGCAGCACTCG
TACTCTCATTCGCATTCCAATAGTACCAGCATGGTGGGGTTGGCTCCCGGCAGCCCCGTA
GGCACCGCCGGAGCTTTGCATGGAGGGCATGCGAGTCAGCATTCTCGAGGGACAGGCCCC
GGAGGATCGCCCGAGGGACCCGCTGGGTCGTCTTCGGTGGGCACCCCCGAAACGCCTTTC
CGAAGAGGACACAGAAAGGCGTCTTCGCTGTCCACCAACGTATTTACGTCTCCTAATAAG
GATGGTCGACAGCCTCAGTCGCGGGATGGCGATCTTATGTTTCCTGTGCGCCAGCCCTCG
GGACCTCCACCCGTTGACGAACTTCACACCCGAGATGTTAATTTCGACCAAAGCAAGGTC
GCCGAGATTTTACGGACCTAGACGAGACCCTTGTGCGGCTCTTGTTCCAGCAATATAATA
ATACACAAGCTCGCTGGGCGAGCTATTTATTGATGAACATGTCCGTACCTTGATACTGGT
AACGTGTTCCCAACTCTAACAAAATAGTGATTGGGTTACTGAAGGTTAACCAAGAGGCAT
CTTAGCGTGCACAGGGATGAGTGCAGGGGGACTCAGGGGTTGTATTGGGAGTACAAGTGG
GTATTGGTAGGAATCATGTACATTCCGCTGGTAGTAGGAGTCCGAGTGCGAGTGCGAGTA
CAGTACTTGACTTGAAGGTGACTACGATTACCTATAAGGAGCCTGGATCCAAGTGGTCAT
GTTCATACAGATGTGTGAAATGTCAAAGGGAAGACGTTTTGATTGACTGAATTGGATACT
TGATTCGTGAATGTCAAGTAGTACGTATTTATCACTGAACCTGGATTGGAGCTACAACA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D20548g_CDS-001

Protein length: 447 aa.
Product: Hypothetical protein conserved in the Yarrowia clade

>YALI0D20548g_CDS-001 MTSHHPTHTTTKMPQSPMLEAEKHKYKQFRPPVLQLNDDTPERPGSAGSNSVEAPLPSPR
AALISGLKNATDRRQQQMQQQQQLQHNYTVGPQGQRIWSPFQEYPGIQRVGSPSKTGVPY
GGYSGAGYPGGSGSGYNSPIRVGSPRSPMFEGASLASQDPNMDGRTSPSPQSMYAHLQAK
QRELQVTSLLISQQQERIQMALNEAIQEGQQQPAQPQVAGAPGSAPGGHKFTPTTLPAHH
SQHQWLHEQLLASPLDDSYSHQHAGPPHGGHGFNAPSGLGYGLGPGRPASPSRIQRPSSA
NFLAHPTPVTAQNNPYMQHSYSHSHSNSTSMVGLAPGSPVGTAGALHGGHASQHSRGTGP
GGSPEGPAGSSSVGTPETPFRRGHRKASSLSTNVFTSPNKDGRQPQSRDGDLMFPVRQPS
GPPPVDELHTRDVNFDQSKVAEILRT*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG