YALI0D20042g

Overview

Description weakly similar to uniprot|Q03653 Saccharomyces cerevisiae YMR212c EFR3 weak similarity to myosins, conserved, ubiquitous membrane protein required for cell viability
Locus type CDS
Locus tag YALI0D20042g

Location

Species Yarrowia lipolytica Positions 2525124..2527801
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2678 (nuc.)
Previous locus YALI0D20020g Next locus YALI0D20064g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D20042g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D20042gYALI0D20042g_mRNA-001YALI0D20042g_CDS-001

Nucleotide sequence

 

>YALI0D20042g
ATGGCGCCCGGAATCCCAAAACCGCGACACCAGCGACTGGTGCTGCAGTGCTACCCCGAC
GGCCAGGCCGCGGACAAAAAACCCAACCCCTCAGAGCTGTCGTATCTGCTCTTCTACGTG
AACCACAGACGAGTCAAGCTGGAAAAGGTCGGACCGTTCCTCGAGAACAAATGCTACAAG
GACGTGAGCCGAGGCCGCCAGGGCAACGTCATGGTGGCACTCGACATCTTTGCAAAGCTC
ATCGAAGAGTGCCACGAAGACCTCAACCTGTTTGCTCAGAACGTGGTCAACACCCTGCTG
GACGTGGTCAACTCCGGAGACCTGCTGCTGTGCCAGCACTCCAACAAGGTCTTTGCGCTC
TTCTGCCAGTACCACGACGGAGGCCTGTTTCTGGGCGACCCCGAGTTTGTGCGGTCCTTC
AAGCAGCTGCTCGAGGTCTACGTGAACATGGCCAAGGTGCCCAACGGCCCCAACAGCGTG
CAGTGGAAGATTGTGGGCCTCGAAGCTGCCAAGAGCATTGCTGGCTCTGCTGCCATTGCC
ACCCAGACCGGATCCACCTCCATTTCCCCCATTGTCCACCTTCTGCTGTCCTCTCTGCAA
GAGTCCCAGTCTGATCTGGAACAGCTGGACCACTCCCTGGATCTCGGAGGAGGCCTCCCA
GACAACATTGGAGGCTCCAAGCGAAACTCTATGCACCAGGACGCCATCGACAACTTCATT
CACGAGGAGTCGCCCGAAAAACAGGTCAGATACCTGTCGTTCCACGCCCTGCGCACATTC
TTCGACACAACCTCCGTGGTGCAGATCCAGAGTGCCACACGAGCCATTGTCACATACATC
ATCAACTCCAACGTGCCCGAGCACTGGGCAACGTCGCTGGTGGTCATTGTGGCCAAGTGG
GCTCCTGTCCAGTACCGGTTTGTGATCCTCGTCTCGCTGGTTGAGATGCTCGTGGCCATG
TCGCCTAACAATGTCAAGTCCGAACTCGTGGTTGCCGCCTTGATCCACGCCTTGCTCTCC
TCTACAGTCAACATGGTCGGCCTGTCCGTTATGGACATTCTGGGATCGCTACTCAACAAG
CAGGCTGCCATCATCAAGCACGCCCAGTCCAACAATGAGGCCAGCGGCGCCTTCGAGGAG
CTCATTGACAAGCTTTCGGCCTGCATGATCTCCCTGGGAACCCACATTTACTACGCCGAC
CAGATTTCCGATATGGTTGGAGAGGTTCTGTGGCGATGTACTGACCCTGCTACTGCTGGA
CAAACCGGCCATGCCGTGTCTGCGGACGACGGAACTGGCCTGCAGATCAAACGACCCACC
CGTCGAGTTTTTACCACTCTGTCCGCCAACAACGCGGAGCTGCAGCACTCCTCCGACGAG
TCTGTGGGTGCCGCCACAGGCGGAACTGCCAACGGAAGCGCCGGTGTTGGCTCTTTCAGC
CACGACAACTCCCCCGACGTGCTCATTCGACGTCTGGCTATCGTCGAGGGTTTCTTCCGA
CTCCAGAACGAGGAGCAGGACATGACTGCCCACAACTCGGTACCTCTTTCGGCTTGGGAC
GGCACTCAGTATCTGCTCAACCACGACTCGGCCATCGTCAAGGAGGCCTACGTCTTCTGC
TTCGTTGCTTTCCTCGAGTACGAGTTTGGCAACCCTGACAGATTCCAGATTGGATTTGGC
CGACGTGGATACAACCAGAACGTGGCCTACGGCTTTGTATCCCATCTTTCCATGCAGCTC
AACAAGCTCATCACCAACACTCGAGCAACTAACGGAGATTTCCTGCTTGGAAACTCGCTG
CTTCAGAATATTGTCATTCGTCTGCAGCAAGATGGTGTGGTCGCTACCTTCCCTCATATG
CTCAAGGCCCATGAGCTTGGCCGTGCTCTTGTCACCGGTCAGTCCTCGGAGTCCAACACT
CTGGCCCAGGGAATCATCATCGAGGACATCTTTACTCTCTACCTCAAACAGGTTGGAGAT
GTTTCTGATGCTGCTGATCTGACTGTGCAGGCTGGTGACGAGGTGGCTCTTCGAAAGAAG
CTGGGTCTGTGGCCCAACTACCTTGACTGGCCCGTCTCCTCGTCGTCTCGCATTCAGGAT
GCCGACGCTCAGATTGATACCTCCATGGTCGCCAAGATGAAGACTCTTTCTCGTTCTGAG
GTGGAGGGTCTGTTTGCCGAGTATGTCACCAGCATGCCCCAGGAGACTCGGGCTGAGCTT
TTCTCTGACTACGATGACGTCATGACTATTCACTCTCGACAACAGGTTCCCGATGAGAAC
CTGATTGTCGGCAAGGCTCGATCTCTCAAGCAGCTCAACGCTGGCTCTATTCTCGAGCGA
CAGACCATGCGAGATGGATGGCTGGGAGACGATGTCAAGAACAACAAGTTCGCCGAGGAG
CGAAAGGGTTTCACTCCAACTGTTTCCGATCTCAAGGGCGCCATGGGCGGCAACGCTTAC
GTGAGCAAGGAGCCCATTGCACAGAAGTTTGATCCTCAGACGTTCCTCAACACGTGGACC
GTGACGGATAATTTGGGTGGATTAACCGTTTAGGCTGCGACTGGCTCGTTAAGCCAGAGG
CGAACATGCTATTATTGGTAGGCATGTCGAAACAATCAAGGTAACATTATGTAACGACGG
GAAAAGATAACTAATTAATACGATTCTACTGTATATTT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D20042g_CDS-001

Protein length: 851 aa.
Product: Conserved hypothetical protein

>YALI0D20042g_CDS-001 MAPGIPKPRHQRLVLQCYPDGQAADKKPNPSELSYLLFYVNHRRVKLEKVGPFLENKCYK
DVSRGRQGNVMVALDIFAKLIEECHEDLNLFAQNVVNTLLDVVNSGDLLLCQHSNKVFAL
FCQYHDGGLFLGDPEFVRSFKQLLEVYVNMAKVPNGPNSVQWKIVGLEAAKSIAGSAAIA
TQTGSTSISPIVHLLLSSLQESQSDLEQLDHSLDLGGGLPDNIGGSKRNSMHQDAIDNFI
HEESPEKQVRYLSFHALRTFFDTTSVVQIQSATRAIVTYIINSNVPEHWATSLVVIVAKW
APVQYRFVILVSLVEMLVAMSPNNVKSELVVAALIHALLSSTVNMVGLSVMDILGSLLNK
QAAIIKHAQSNNEASGAFEELIDKLSACMISLGTHIYYADQISDMVGEVLWRCTDPATAG
QTGHAVSADDGTGLQIKRPTRRVFTTLSANNAELQHSSDESVGAATGGTANGSAGVGSFS
HDNSPDVLIRRLAIVEGFFRLQNEEQDMTAHNSVPLSAWDGTQYLLNHDSAIVKEAYVFC
FVAFLEYEFGNPDRFQIGFGRRGYNQNVAYGFVSHLSMQLNKLITNTRATNGDFLLGNSL
LQNIVIRLQQDGVVATFPHMLKAHELGRALVTGQSSESNTLAQGIIIEDIFTLYLKQVGD
VSDAADLTVQAGDEVALRKKLGLWPNYLDWPVSSSSRIQDADAQIDTSMVAKMKTLSRSE
VEGLFAEYVTSMPQETRAELFSDYDDVMTIHSRQQVPDENLIVGKARSLKQLNAGSILER
QTMRDGWLGDDVKNNKFAEERKGFTPTVSDLKGAMGGNAYVSKEPIAQKFDPQTFLNTWT
VTDNLGGLTV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG