YALI0D19118g

Overview

Description similar to uniprot|Q12094 Saccharomyces cerevisiae YOR006C TSR3 Ribosome biogenesis protein required for correct processing of the 20S pre-rRNA at site D to generate mature 18S rRNA
Locus type CDS
Locus tag YALI0D19118g

Location

Species Yarrowia lipolytica Positions 2416252..2417366
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1115 (nuc.)
Previous locus YALI0D19096g Next locus YALI0D19140g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D19118g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D19118gYALI0D19118g_mRNA-001YALI0D19118g_CDS-001

Nucleotide sequence

 

>YALI0D19118g
ATGGCTCGAAAACAGACCGGCAAGGGCCGACGTATGGAAACCAAGCACCGAGAGACGGCT
CACAAGTCGAATTTCCCCGCCAAAATGGCCATGTGGGATTTCGAACACTGCGATCCCAAG
CGGTGCTCCGGCAAGAAACTGCACAGATTGGGCATCATCAAGTCGCTGAGAGTGGGCCAA
AAGTACAGCGGAGTTGTTGTCTCGCCCAACGGCAAGCACGTGATTTGTCCCGACGACCGA
GAGATCGTGGAGGAGCACGGAGCAGCAGTTGTGGAGTGTTCTTGGGCCCGGCTAGACGAG
GTGCCCTTCAACAAGATCGGAGGTCCCCATGAACGTCTGTTGCCGTACCTCGTGGCTGCC
AACCCCGTCAACTACGGCCGTCCATGGAAACTCAACTGCGTGGAGGCTCTCGCTGCCTGT
TTTGCCATCACAGGCCATCTCGACTGGGCCGAGGAGGTACTGTCTCACTTCTCTTGGGGT
CAGGCGTTTCTGCAGATCAACGAGGACCTGCTGGAAATTTATGCCGAGTGCACAGACGCA
GCCTCGATCAACGAGGCCCAGAAGATGTGGCTAGATGAAATCGAGGCTGAGCATGCCCGA
AGACAGAAAGAAAAGGCTGCATCTGGAGGAGTGTGGAAACACGGAGAAGATCGAGACCAT
GGAAAGGCTGGAGAACTTCCTCCCTCCGATGACGATGACGATTACGACGAGGGAGATATC
GACTTTAACAGACAACTCGATAACCCCGGCGAGGTCGATGTTTTTGGAAACACCATTGTG
AAGAAGGAATCCAGAGTAGACGCCCTGGGAAACACCATTGAAAGCGACAGTGAAGAGGAA
GAGAAGAAGTACTTTAAACAGCCCAGAGTTGATGCCTTGGGCAATACTATTGAGAGTGAA
GACGACGAGGAAGGGGTCAAACAGCCTAGATACGATTCTCTTGGTAACACTATCGAAAGT
GAAGAAGAGGAAGAAGAAGACGAGGGTGAGTACGATGAGGAAGACGAAGTGGATGCGCTG
GGAAACACCATCAAGAAGGTGTTGTAGAATATTTAATTAATGCATGATATAGCAACTACG
GCGGAACTACTACTGTATTGCTGTACGAGTATAGG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D19118g_CDS-001

Protein length: 349 aa.
Product: Ribosome biogenesis protein required for correct processing of the 20S pre-rRNA at site D to generate mature 18S rRNA, putative

>YALI0D19118g_CDS-001 MARKQTGKGRRMETKHRETAHKSNFPAKMAMWDFEHCDPKRCSGKKLHRLGIIKSLRVGQ
KYSGVVVSPNGKHVICPDDREIVEEHGAAVVECSWARLDEVPFNKIGGPHERLLPYLVAA
NPVNYGRPWKLNCVEALAACFAITGHLDWAEEVLSHFSWGQAFLQINEDLLEIYAECTDA
ASINEAQKMWLDEIEAEHARRQKEKAASGGVWKHGEDRDHGKAGELPPSDDDDDYDEGDI
DFNRQLDNPGEVDVFGNTIVKKESRVDALGNTIESDSEEEEKKYFKQPRVDALGNTIESE
DDEEGVKQPRYDSLGNTIESEEEEEEDEGEYDEEDEVDALGNTIKKVL*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG