YALI0D18084g

Overview

Description some similarities with uniprot|P40059 Saccharomyces cerevisiae YER088C (ohnolog of YBL054W) DOT6 involved in derepression of telomeric silencing
Locus type CDS
Locus tag YALI0D18084g

Location

Species Yarrowia lipolytica Positions 2258028..2259815
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1788 (nuc.)
Previous locus YALI0D18078r Next locus YALI0D18106g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D18084g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D18084gYALI0D18084g_mRNA-001YALI0D18084g_CDS-001

Nucleotide sequence

 

>YALI0D18084g
CAGAACCCAAGGATACAAGACGAATACACGGTGAGTATCGCTGACTGGTAGCGACAGCCG
TGAGTGCGAACGGCGAGAGGTCTGCGACAGCTGGACAGGCCCGGCGGAGCGGATCCAGGA
ACGTGGTATTGGGGTCTACACGGGCCCCTATGGGGGGCGGAGACGATTTCGGCTCCAGAG
GGCTGTGGCTGGAGTCTCGTGGCCCGTGCGGTTCGGGACGACTTTGTTGCGTGTCTCCAG
CTGTCTTGTGGGTGATTTGACGGCTTCTCAAATTTCGACATTTTCAGGCTTGATACCAGC
TGCTGCATCGGAGTCGCAGGGGACGGAGGCATAGTGACCGACACAGACAGACTTGTGTCG
ACAGGCGAAGCGACATGCCATTTAGAAGCGGCACACACCAGGGCACTTTGAAACCTGTGT
TGTTCAGACTCGGCTCACCAGGGTCCGGTGTGACCCAATGTCAAATCCTAGTGCAACGCA
CCACAATCCCCAACCAGGCACACCCTCGCAGAACCAATTGAAGAGACAGAACCCGATAGA
CCACTGGCGGTAGTGCAGAATGCCCCCCTGACCCTCTCCATTGCCACTCGGCAGCCGCTC
CAACCGCTTGGTCACCTTTTCTCCCCACTAACACAGGCCAGTATGACCAAGTAATCTCAC
ACGACTCTCCCGACACAGTATCACCTCCTACAACCCTGCTATGAACACCGACCGCCCCGA
GCTGGGGTCTCCGGAACAGTCGTCCTTGTCCCAGCAACAGCAGCAACACACACAGCAACA
CACACAGCAACACACACAGCAACACACGCAGCAACAACAACCTGTGGTGGGACAGTCCAT
ACCCCCATCATCCAATGTGTCACAACAGCAACAGCAACAGCCGCCGATAGTACCGACTCC
ACAACCGCCGCTGCCACTAACAACGCCAACAGAGCCTCCCCTGCATAGCTCATATAGCAA
CTACTTTCGACCCTACACGTCTTCAGGAGTGGTAGGTGGCCCGCCGGCCTCCACCTCGCC
CTATCGCAACTACTCCATGACCCGCTACTCGTCCACGCCCTACATGATGAGCCAGACAAC
CTCCACCCATCTGCCCAACCCCCAGACATACTATCATGAGAGTGCCTTTGGCAGTCTTGG
AGACAAGGACATGGACGTTGGAGGAGTGACCAACACGGTAGCGTCATCGTCGGGCACCAA
GAATGAGTTCCGCGTGGCGCCCATGCGCAATTCAAAGGCCAAGTTCACGGCGGACGACGA
TGAACTCCTCATCGAGCTCAAGGAAAACCAAAAGTACTCGTGGAAGAGGATAGCGCAGCA
TTTCCCTGGACGCACGCCTGGCGCTCTACAGGTGCGATATTGTACCAAGCTACGCAAAAA
GTCCCAGAACTGGACGTCGGAGGACTTGAAGGATCTCACCAAGGCGGTACAGGACTACCA
CAATGAAAAATGGCACATTGTCGCGCAGAAGATGGACAACAAGTTCACCTCCAATGCGTG
CAGAGAACAATACGAGTTGTTGACCAGTGCCACCAGGTGGCAGTAGCGAGTTGGCATCAT
GTCACGGCCAGGGAGCTACAGTGAGGGGCAATGACGAGGGGGGGCAAGACAATGCAGAAG
AGCGTGTCACAGATGCTACGAGACAAGAAGACTGTGACGAGGTGGATGTATATTATAAAT
TATTAGAGTATGCGAGCAGACTGACTGAGCTGATGCCAGTTTGCACCATTACGTATGACT
CTGGGATGTGTACACATGTAGCACAATAGATTCTTAGAAGTTGGTGGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D18084g_CDS-001

Protein length: 282 aa.
Product: Conserved hypothetical protein

>YALI0D18084g_CDS-001 MNTDRPELGSPEQSSLSQQQQQHTQQHTQQHTQQHTQQQQPVVGQSIPPSSNVSQQQQQQ
PPIVPTPQPPLPLTTPTEPPLHSSYSNYFRPYTSSGVVGGPPASTSPYRNYSMTRYSSTP
YMMSQTTSTHLPNPQTYYHESAFGSLGDKDMDVGGVTNTVASSSGTKNEFRVAPMRNSKA
KFTADDDELLIELKENQKYSWKRIAQHFPGRTPGALQVRYCTKLRKKSQNWTSEDLKDLT
KAVQDYHNEKWHIVAQKMDNKFTSNACREQYELLTSATRWQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG