YALI0D17988g

Overview

Description weakly similar to uniprot|Q7SHK8 Neurospora crassa NCU02896.1 hypothetical protein
Locus type CDS
Locus tag YALI0D17988g

Location

Species Yarrowia lipolytica Positions 2230381..2233858
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 3478 (nuc.)
Previous locus YALI0D17974g Next locus YALI0D17996g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D17988g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D17988gYALI0D17988g_mRNA-001YALI0D17988g_CDS-001

Nucleotide sequence

 

>YALI0D17988g
GAGGAACTTCGCCCCGAGCAACCCAGCTGCTTAGTCATATTCAACAGCAGCCACCCGGCA
CGACCGCGACGCGACACGCACTTGAGCACTACACGACGCAGATACGACACCAGCCCAGAG
ACTCATTAGTCATAGGGCCAACATTGAACCGCGACAACCAGGACGACCAGGGAACTCACA
CCATCAGTGGCGAATCGGCGAAACCTGCAACGTTTCAGTCACGTGACCCATCAGCAATTC
GCGCACCGGTTTATTGTTTAGTTTTGTTTTTGGTTGCCTGCATCTACGGCTTTTTGCGTG
CACGGCTTTACTTTGATTACATTACTCCGGCGACTATCCGAGAGAGCAACAAGAATATCA
TCCGATCTGAGCTTGCATCAGTCTAGCGTTCGGTGTGGTGTTTTTTATATTATTTCACGC
AGGTGATATCAGACGGGCTTGAAAAGGATCAGATACAGGTGAGTGAGTTATGGAGTGTTG
TCCAGTGTGGGGGAGAATACGAGACCAGAGGGTGGTGCATAAACACTTCATTTCACATAT
CCCTGAAAGCTATAGTTACTACAGCCCTGTGAAGAGATGATGATTCTTCCAGCCATCCAG
ATGTTTCACCACCACTCCCCAGATTCGTCAATGCTGCGATCTTTATCCATTCTAACACAG
GTACACACACATGAACAGCGGCCGTCCACGACAAATAGCAAGTTGCGTCAACTGCCGGAG
CCGCAAGGTCAAATGCGATCGTCAGAGACCGTCTTGCTCGCGATGCATCAAACACAAACA
GTCATGTTCGTACTTTGATGGACGAGAACTAGAGGTTCCAGGACGAAGGGTTCCCGTGGA
GGTACGATTGAGCCAACCGTCTCCGTCTTTGGTTTCGGGATTGGCTCTGCCAGGGTACTA
TTATGGGTATCCCGGGCAAGGGCAACCGGGTTTGGGAATGCCAGGTCAGGGTTCTCCAGG
GTCAGGAGTGCCACGTGACCCAAGGGTAGGGCCAGGATCACCACAGGGTGTGCCACAAGG
ACTGGGGCAGTCTCCAGGACACCCTCCAGGGCTAGGACAATCTCCTGGACACGGACAGCC
GGGGAGTGGGCAGTCGTCTAATCTAGGCCACATGCCTGGATCCGGTCCGTCTCCTTCCCA
GCCTCCCCAATCTCCCCTGGTTGCTTCGAACACCCCTGGAAGATTGGTCAAGGATGACAG
TGGGATTCTCCACTACTCGCAGTCCTTCTTCTCTTCGGTTCTACAGTCCAACACACCTGT
CAAGTCGATGGAAGGCGAGGCTTCAGGGGTTCCGTTCTTTTGTAAACCGGGACAACCTGA
TCCAAACACTCCTCCGGCGCAACTACCTATTCCAAGGCACGTGATCACAACGCTTTTGAC
CACCTACATCAGCGACATACACTCTGTGATTCGAATCGTTGACTTGGTGCAATTCCATAA
GGATCTGACGGAGTACTTTGCCGAACCCAAAACAGCCACGCCCGACAGAATGGCAATGTT
GTATGCCATGCTGTTTTTCGCAGCAGACGTCTACATTAAGCTGAACGAGGGGGCCCAGAG
TCAAGACAATGGAAGCATGGAACATTCGGGGTTGGGGAAATTAAGAGGCATGGAATTGTC
GGGTTCCAAGGCTGGAAGTGGAGGTAGCTCGGACGTTAGTATTAAGACATGGGTAGAGTG
GAAAAACAAGCTCTATACCGCAGCTACCAATACTTTGATCCATTCTGAATATACCTTGAA
GCCCTCGTTCAATGCCCTCAGAGCCCATATTCTTCTCCTTTACTGTTCAGTAGGAGAAAC
TCTTACCAGAGGAGCTGGTCTGGTTGAATTGCCTATCCTCATCCGTCTAGCTCAGTCGAT
AGGTCTACATCGAGATGCTAGCAATTTCCCAGGCATGTTTACCTTTGCCGAGTGTGAAAT
GCGACGTAGAACGTGGATCTATATCCAACATTTGGACTCATTCTATTCTCGATCGTTTGG
ATTGGAGCCTATGGTGAATGATAAAATGTTCGATACCCGTTTCCCTCTTCTTGTGGACGA
CGAAGACCTCCATGAGGGAATCTACAAGGACAAATATGATGCGGGAACGCTTCACGAGTC
GAGTCATGTGGTCTACGATGGGCTCTACTGGCCCAAGATTCCGGAGAAGATGGCTTGGAA
TGATATGTGTCAAAGCGCAATTCACACATCCACCCCAGTCATGTTCAGACGACTGTACCA
GAGACTGGTGATGTGCAATCCACGTGATTTGTCACGTGATCTGGCCCTTTTGGATCATGT
GAGAGGTTTCCACGAGCGGTTGTTTGAAACTACTTCTCACTGTGACAGTCGGAGTCGGCG
AACCGCCTTCTGCATGTCCCGATTGGTCAACTCCAGATGTCTCATTTATCTCTACACGCC
ATATCTTTCACGAAAAGAAAAACCAGGTGAATTGTTATCTTCTCCGGACTCACGTGACTC
TCGCGATGCACTCAGGGAGCATATCTTCACGACCTCTCTCTTGTCTCTTGAGTACGCGCT
CGAAATGACGCTCTCGCCTTATTATGTCAACCAGCAGTGGTTCTCACGTAAATACACGCA
GGTGGAGCACCTGCTCTTTCTGTTGACTAAACTGAAACTTGATCCCAACTGGAGCCAACA
GAAGCGGGCCTGGCAGCTCGCATGTCGAACATGCGAAGCCTACACAAAGGGCTACTTTGC
GGACTCGTCTTCCAAAGGCTGGCATGCGTGTATTAAGCTGAGAGACATTGTGAGTCGCAC
TCTGGGGCTTGAAATTGATTTGGGTAAGGAACAGTGGCCGTTGAGTGTGGAATACGAGGG
CACACGCAGAAAGGAGGCCTCGAAGGACTCGCTGTCGAGTATTCGTGGTTTTGCCGCATT
TCAAGCTACTAATTCACGTGACGCTGTGGAATCTCGTGAAAGTGGACTTCGAAGCAGTCT
CGGTGGTGGATTCAACGGAGTCAAGGTCGAGGATCGTGAGCCATGTGCTGACTCACGTGA
GGCTGTGGCTGAGCCAGCAACTGGCCCTTCAACTACAGGGCCTACCAACAATCCCAGTGA
TGTGGACAAGAAGGTGACTGATTCTGCGTTTGCAGCTGCCATGGAGACGGCCAACGACCC
AAGCCATGTATCGCAGCCGGTCACTATGGAGACGGACATGTCGTTTTCGCTGAACCCGAC
CGACATTCTCGATTCAAACCTCTTTGGTGCGTTTCCCCTGGGAGAGACCAGCGTCAGAGA
TGATTGGACGCAGGAGTTGGGTGGAGACTTGGACTGGAGTGAGTGGGACAAGATGGTTCA
TTTCATTAGAGGACAGTAAGAAACCAACCAACAGAAACGAGCGGCCAATGACATTCAATG
AACCTCTCATTTGGGTGATGCCACTATTCCAGCGCCAACCACCACCTACTCTTACCACCG
ATAGCACGGTACAGCATGCAAGTGCAGTAATACAGTAATATATTAACCACATCACCTT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D17988g_CDS-001

Protein length: 883 aa.
Product: Conserved hypothetical protein

>YALI0D17988g_CDS-001 MNSGRPRQIASCVNCRSRKVKCDRQRPSCSRCIKHKQSCSYFDGRELEVPGRRVPVEVRL
SQPSPSLVSGLALPGYYYGYPGQGQPGLGMPGQGSPGSGVPRDPRVGPGSPQGVPQGLGQ
SPGHPPGLGQSPGHGQPGSGQSSNLGHMPGSGPSPSQPPQSPLVASNTPGRLVKDDSGIL
HYSQSFFSSVLQSNTPVKSMEGEASGVPFFCKPGQPDPNTPPAQLPIPRHVITTLLTTYI
SDIHSVIRIVDLVQFHKDLTEYFAEPKTATPDRMAMLYAMLFFAADVYIKLNEGAQSQDN
GSMEHSGLGKLRGMELSGSKAGSGGSSDVSIKTWVEWKNKLYTAATNTLIHSEYTLKPSF
NALRAHILLLYCSVGETLTRGAGLVELPILIRLAQSIGLHRDASNFPGMFTFAECEMRRR
TWIYIQHLDSFYSRSFGLEPMVNDKMFDTRFPLLVDDEDLHEGIYKDKYDAGTLHESSHV
VYDGLYWPKIPEKMAWNDMCQSAIHTSTPVMFRRLYQRLVMCNPRDLSRDLALLDHVRGF
HERLFETTSHCDSRSRRTAFCMSRLVNSRCLIYLYTPYLSRKEKPGELLSSPDSRDSRDA
LREHIFTTSLLSLEYALEMTLSPYYVNQQWFSRKYTQVEHLLFLLTKLKLDPNWSQQKRA
WQLACRTCEAYTKGYFADSSSKGWHACIKLRDIVSRTLGLEIDLGKEQWPLSVEYEGTRR
KEASKDSLSSIRGFAAFQATNSRDAVESRESGLRSSLGGGFNGVKVEDREPCADSREAVA
EPATGPSTTGPTNNPSDVDKKVTDSAFAAAMETANDPSHVSQPVTMETDMSFSLNPTDIL
DSNLFGAFPLGETSVRDDWTQELGGDLDWSEWDKMVHFIRGQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG