YALI0D17666g

Overview

Description weakly similar to uniprot|O08654 Rattus norvegicus UPF0183 protein
Locus type CDS
Locus tag YALI0D17666g

Location

Species Yarrowia lipolytica Positions 2165181..2166580
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1400 (nuc.)
Previous locus YALI0D17644g Next locus YALI0D17688g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D17666g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D17666gYALI0D17666g_mRNA-001YALI0D17666g_CDS-001

Nucleotide sequence

 

>YALI0D17666g
ATGAGCAGTCTAGCTATCAAGCCCGGAATTGGACTCGGTCCGTTCAGTGAGTATTTTCAG
GTGATATGAGAAATCTAACGCGTTCTAACACAGTTCTTGGCATGGATCTCTACGACTGTC
TACAATTCATCAAGAAACACCACACCACGTTCCCTCTGGTCAACGTCATCTACTCGTCTC
AGAGCCCGCTTAGCAACTTCATTGTGGCGGATATGCCGCGTGTCGGGCTGCGACTGCAGT
TTGGAGGAGTCACGCAGAAACTGTTGCTCATCGAAGTGTACAACTTCACGCCTGCCAACG
GACTGGCCCTGGAGTACAACGAAACAGCCTTACCAAAGGGAAATATCAGCTTGAGGGCAA
TCTACGGGGGAAAACTGTTTGGTCCAACTTACGCCGGGGAATATAAGAAGGAGCTGGAGA
AGTACGTGCTGTCGTATCCTGGAGTGGCCTTCAGTTTCAACGTGGATGCGCAAACGGTGG
AGAAAAACTCTCTGAGCGACTCCCAGTCCTTCATCAAACACCTATCGTCCTCAGAAACCA
CATCCATGGCCATCTTCAAGGGTCCTACTTGGTGGGAAGCACTCAAGGAGCTGAACCAGG
AGGGAGCAGATGTGTCCCATCAGGTGAGTTTACGGCCGCAAAAGGGGGAAATTTATTTCC
CGGCCGGTAAAGTAACCGTGGGATCCACAACAATGCAGGATATCGTTGCCATGTTCGGAT
CGCCCGAAGAGAAGTTTGTGCGGAAAGACTCTGCTCTCAGTATCCACAGAAAAGACTCCA
GCAAGAGCACACGCACAGAATCCGGACACGTGACATTCTTCAATTATTTCCGACTCGGCA
TTGATTTCTGTTTCTCCAACTCAGGCCAGCTTCTCAAGGTCATTTTCCATCATAACATCC
CAGGAACCATTGAGTTCCAGCGCTACTCCCGTGCACGATGGAGCCTCGAGGCAAGTAATC
ATGTAACCGTCACTTCGGAGATGGACTACACTGAGCTGGCTCAGAAACTGGATCTATCTC
ATTCCAAGGGTTTGACCTTGGCCAAAGCGATGGAATCTCCTAGTTCGTCTATTGAGCTTG
TGAATGGCGGTAACGAGGTCTTTCCGGATTCTAACTGGGGCATGGCTGATTTGTGCGGCA
TGGACGGAGCAGTGTTTGAGTTTTGCAAGCAGGGGTCTATCGCTAGTGTTACTATTTATT
AGGGATATCTCAGTGCTTCCGCCGATGGAGTTCCACGTCCTCACAGATACCTCATATCTG
ATGTTCAAGAGATAGACACCGCCATAGAGGCGGGATTGCATGTGAAATAGGTAATGGATG
AGGTGGCGCTGCTGATGTAGTTGAACCACGGGGACATACCACTCTGTATGTACTGTACCC
CTCAAACTCAGTCTACTTGT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D17666g_CDS-001

Protein length: 385 aa.
Product: Conserved hypothetical protein

>YALI0D17666g_CDS-001 MSSLAIKPGIGLGPFILGMDLYDCLQFIKKHHTTFPLVNVIYSSQSPLSNFIVADMPRVG
LRLQFGGVTQKLLLIEVYNFTPANGLALEYNETALPKGNISLRAIYGGKLFGPTYAGEYK
KELEKYVLSYPGVAFSFNVDAQTVEKNSLSDSQSFIKHLSSSETTSMAIFKGPTWWEALK
ELNQEGADVSHQVSLRPQKGEIYFPAGKVTVGSTTMQDIVAMFGSPEEKFVRKDSALSIH
RKDSSKSTRTESGHVTFFNYFRLGIDFCFSNSGQLLKVIFHHNIPGTIEFQRYSRARWSL
EASNHVTVTSEMDYTELAQKLDLSHSKGLTLAKAMESPSSSIELVNGGNEVFPDSNWGMA
DLCGMDGAVFEFCKQGSIASVTIY*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG