YALI0D16841g

Overview

Description weakly similar to uniprot|P40469 Saccharomyces cerevisiae YIL128w MET18 involved in NER repair and RNA polymerase II transcription
Locus type CDS
Locus tag YALI0D16841g

Location

Species Yarrowia lipolytica Positions 2077100..2080732
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 3633 (nuc.)
Previous locus YALI0D16819g Next locus YALI0D16863g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D16841g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D16841gYALI0D16841g_mRNA-001YALI0D16841g_CDS-001

Nucleotide sequence

 

>YALI0D16841g
ATGGACGCCTTGGTCAACCAATACATGGCCGCTACGGGCAACGCCGCAGGTATCGCTGAT
TGTGAGTATCCAGCTTGGAGTTTACGGTGGAGGGAGTGTGCGACAAAGGTGTGATGGACT
ATAGATCCACGACCCGACGGAGATAGAGACTGGATAGTGGTAGGAGGGAAGAAGGAATGG
GAATCGACTTTTGGACACGTGTTTATAATTCTGGATGTTGTTGCCGCGGCTTTTTCGCCG
CAGATGTGGCGGTGGCGGTGGTGGTAGTGGTGGTGGTGTGTTCGCTGCCTTATGATCCAT
CTAGGTCTAGACCAGAAGATGATCGAGATTTGATAGAGATGGGCTAAGTCGATGAAGGAT
GAACCGTTGACAGGGAAACATGTGCTTTGGTTGCTTTTCTTCTTTCTTTATGGTCGGGAA
GTTGTGGTTCAGCTGTTATCTGAGTCATGCGGGGTAAGATATGATCTGAGGTGATCTAGA
CCGGTCCATGGATTGACTGGGTTGGTTTGGGTGTCTGTTTGGTGTCTGTTCGGTGCCTGT
TTGGTGTCTGTTCGGCGCCTGTTTGGGTGCCTTCCAGTGGCAAGTGGTAATATCGTCTCT
CTGGTGCCCTACCCTCGTATCTTGATCATCATCTCCTCCCACTATGCCCCGTCTCTTCCT
TCCCTACAACTACCGCTTCATGCTAACACAGTGATCACCACGGACCAGGCTAAACTGGTC
GATCTCGTGCAGCTGCTCGGAGAATACCTCGTTGACGAGTCTGCCAAAACCCGACAGACC
GCCATCCAATGCATCTCTGACGTGCTCAAAGATCTGCCTACTGACAAACTGACCAAGCAG
CAACTCACTGTCATCTGCGAGTTTCTCAGCGAACGTCTGGCCGACGAGCCCGTCACGGGC
CAGGTTCTCGACGGCATGAACGCCGTGGTCACCATGTCGGCCATCAGCTCTCTGAGCGTC
AAAAAAATCGTGGACAGTCTCGTCGGCTACTACCTGCCCTCTTCACATGTGCAGGTGGTC
AGATACAAGGCCTACGTTCTACTCCGATACTTGACTGAGAATAAGAGCCAGTCGCTCAAA
AGCACTGCTTCAGCCCAGGAAGGCTTCATCAAGTGTTTCCTGACCTGCACCAACGGCGAG
AAGGACCCCCGAAACCTGCTGGAGTCCTTTGCTATCAACGAGTGGATCAGCAACAACCTG
ACTGTGCCTGAAAACGACGTGGAGCCGCAGTTTGACGCCACCTTCTGCTACTTCCCCATC
ACCTTTAGACCCCCCAAAAATGACCCCTACAAGATCACAGCTGATCAGCTAAAGGTGGCG
CTCAGAACCGCTCTGGCGGCCGGAAAACAGTACTCCAAACTCATCTTCCCCGCACTGCTG
GAAAAACTCACCTCGTCGTCGTTATCGGTCAAGGGAGACACTCTGGACACCATTGCAGCA
TGTATCGCCAACTACGGTCCGGAAATCACCGCCGAAAATTGGAAGGACATCTGGGACGGA
ACCAAATTCGAGGTTTTGCATGGAAGCGAACCTGAGCTGGCAGGAAAGACCCTTACTGTT
CTAAAACGTCTCGCAGAAGAGCTGCAGAAGCACGGAGACCAGTCACAGCTGGATGAGTAC
CTCACAAACGTTGAAACTGACTGCATGGACAAGCTCAAGGACCCCACAAACCGTCTGAGC
ACCCAGGCAGCCCAGATCGTGGCGTCTGTCAGTTTGGCAGGTGTAGACGTTGCTAAAAAG
CTTACCACTCCGGCGCTTTCTGCTATCCTGGCCGTCACTGACACTCAAATCCCCACTCTG
ACGTCCATCTGTGAGATTCTGCTCATTTTCCTCAAGTCGTCCCTCCCCAATGTCACTTCT
ACACCTCTGTTTGAGTTCAAGGACCGCGTTTTCGATGTGCTGGCCAAGGCCCTGCTCTCC
AGTCCGGAGTCCGAGTCTTCTCTGCGCATTCTGGCCATCAAGGGTTTCTCCGCCGCCGTC
AACATCACCGAGTTCCTCTCTCAAACAGACACAGAGCTGATTGTCCGGTACCTGGATGAC
GTCATTGTCAACGACACAAACACAAAAACCCTGCAGGCTGCGGTAGACGCACTTGTTCTG
ATTGCTGAGAAGCCCGGAAACGCAGGAATTATTCAAAACATCACCTTCCCGGCTCTGCTT
TCAGAGTTGCCTGCTTCAGACTCTGACAAGGAAGCCAAGACTCGAATTCTGTTCCTGCTA
TCTGTTTTGGCCAAGGTGAGTACCTCTAAGACTTTGATTGAGGTTCTCCAAGTCAGAATA
CTGTCCCACATGGATACCGTTACTGGGAGCACTGCGTTGTATCCCACTCTGCTTCTGCAG
ACTCTTCTGAGCGCCCTGAAGGAACAGGAGTCCAAGGACAACTTTGATACCACATCGTAT
CTCAAGTCCACCTTCCCCAGATTGTTTAAGACTGCCTTTGATGCCAGCTACTCGGGGTCC
CCTGCTGTCATGGCCACTCCTCAAGTGACTGAAGCTGCTGGACGAATCCTCACCTCCATC
ACCCGTCATTGCACAGTTCAGGATCAAGTTCTGACAAGTCTCTTCTCCCTCTTCTTCAAC
GGAACCACCAGTGATATCTTTCCGAGTGCCACCCTTCCCGAGAAGCAAAAGTTCAACGTC
CTTGATACTCCTCTGCCCTGTATGAGTCTTTTGACCTCTTGTTTTGCTCCTCTGAGTCGC
GACCTCGAGCTGCCCAAGCTTCACGACCCCTTTGTTCTTCTGAGAAGCGTCATCAGCACT
GTTTCTGGCACTGCCGATCCAGCCATTCGACGACACTACCTTCGATTTGCTGGTCTTCTC
ACAAACAAATGGATCAACACCGCCGCTTCTCCGCAGGCTGTGGCGTTTGTTACTGACCTG
CTGGAGACCGCCACTCTGGACGCACTCGAATCCGCTGCCTGGATTATAAAGGGCTGGTTG
CTGAAGAACGACTCCACAGCTTTCAAGTTTGTGGATACTCTTGTGGGCATGCTCCCTGGC
GCCAATGGACTGGTGGCAGCCAAATCGTTCGATATTCTACTTGGAGACGATGAACTATTT
GTCAAGCAAAATTCGGTTGTCATCCGACAGCTTTACAAGCAGCGGCTTTTTGTTTCTGTG
GTGCCCAAGCTGGTTCAGGGCTACAAGGACGTTGACGATAAAGTGCCCTACGTCGTTGCT
CTGTCCAACATTGTCAACTCTGTCCCCAGCTCCATTGTGTCGCCTGCACTCGAAAGCATC
ATGTCTCTGGTGGTGGACTCTCTGAGTGTTTCTGAGGCCCGGGTCAAGACTGCTGGCATC
GACACAATCCTCGCTACCATTGGACAAACCGATATTGTGGCCTCCTATCTCGACGAGCTT
GTTCCTTCTCTTCTGGACGCTGCATTCTCCTCGCCTGCTGTCTCCATCAAGGCTCTTCAG
TGTCTGGGAGCCTTTGCATCCACTGTCGATCTTCCAAAGATTGTTCCTTTCAAGCAGCGA
ATCATCAACTCCTTGACTCCTCTCTTGGACCACAAAAAACGAGACGTGCGACGAGCCTGT
GTTGATACTCGACAGGCTTACTTTGAGCTCGGCATTAACAAGTAGTCACGATAAATAGCT
ACATATATATTTCTATTTAATTATAGCAACTTG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D16841g_CDS-001

Protein length: 985 aa.
Product: Conserved hypothetical protein

>YALI0D16841g_CDS-001 MDALVNQYMAATGNAAGIADLITTDQAKLVDLVQLLGEYLVDESAKTRQTAIQCISDVLK
DLPTDKLTKQQLTVICEFLSERLADEPVTGQVLDGMNAVVTMSAISSLSVKKIVDSLVGY
YLPSSHVQVVRYKAYVLLRYLTENKSQSLKSTASAQEGFIKCFLTCTNGEKDPRNLLESF
AINEWISNNLTVPENDVEPQFDATFCYFPITFRPPKNDPYKITADQLKVALRTALAAGKQ
YSKLIFPALLEKLTSSSLSVKGDTLDTIAACIANYGPEITAENWKDIWDGTKFEVLHGSE
PELAGKTLTVLKRLAEELQKHGDQSQLDEYLTNVETDCMDKLKDPTNRLSTQAAQIVASV
SLAGVDVAKKLTTPALSAILAVTDTQIPTLTSICEILLIFLKSSLPNVTSTPLFEFKDRV
FDVLAKALLSSPESESSLRILAIKGFSAAVNITEFLSQTDTELIVRYLDDVIVNDTNTKT
LQAAVDALVLIAEKPGNAGIIQNITFPALLSELPASDSDKEAKTRILFLLSVLAKVSTSK
TLIEVLQVRILSHMDTVTGSTALYPTLLLQTLLSALKEQESKDNFDTTSYLKSTFPRLFK
TAFDASYSGSPAVMATPQVTEAAGRILTSITRHCTVQDQVLTSLFSLFFNGTTSDIFPSA
TLPEKQKFNVLDTPLPCMSLLTSCFAPLSRDLELPKLHDPFVLLRSVISTVSGTADPAIR
RHYLRFAGLLTNKWINTAASPQAVAFVTDLLETATLDALESAAWIIKGWLLKNDSTAFKF
VDTLVGMLPGANGLVAAKSFDILLGDDELFVKQNSVVIRQLYKQRLFVSVVPKLVQGYKD
VDDKVPYVVALSNIVNSVPSSIVSPALESIMSLVVDSLSVSEARVKTAGIDTILATIGQT
DIVASYLDELVPSLLDAAFSSPAVSIKALQCLGAFASTVDLPKIVPFKQRIINSLTPLLD
HKKRDVRRACVDTRQAYFELGINK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG