YALI0D16401g

Overview

Description similar to uniprot|O74803 Schizosaccharomyces pombe UV excision repair protein rhp23 (RAD23 homolog)
Locus type CDS
Locus tag YALI0D16401g

Location

Species Yarrowia lipolytica Positions 2031816..2033295
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1480 (nuc.)
Previous locus YALI0D16379g Next locus YALI0D16423g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D16401g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D16401gYALI0D16401g_mRNA-001YALI0D16401g_CDS-001

Nucleotide sequence

 

>YALI0D16401g
ATGCTCGTCAAATTGAGAGACACAAAACGCCAACAGTGGACGGTGGACGTGGAGCCTAGC
GACACGGTAGAGACGCTGAAGACCAAAAACGCCGAGGGCAAGGATTACGGCGTGGGCGAC
CAAAAGATGATTTACTCCGGCAAGATTCTCGCCAACACCACCTCCATCGAGTCGCTCAAT
CTAAAGGAGGACGCCTTCATTATTTGCATGATTAGTAAGCCTAAGGTGAAGGCCGCCGCT
GCTGCTCCTGCTGCTGCCGCGCCTGTTGCTGCTGCTCCTGCGGCCGCCGAGCCTGCTGTT
GCCCCCGTCACTCCAGCAACAAGCCGGTCGGTGGCCACCCCCGGAGCCCCCACCAACAGT
GGCAACGTTGTGGGCAACACAGAGACCCCCACGACCGGAGGCGCCGATGCTTCTACCACC
GGCGACATTGGCGCTGAATCTGGCCCCGCCGCGTCTGCTACCGCCGCCGTCACCACCGCC
ATCAACAACATGGTCGACATGGGATACCCCCGAGACCAGGTGGAGGCCGCGATGCGGGCC
GCCTACAACAACCCCGAGCGGGCCGTGGAGTACCTGCTCACGGGCATTCCCGATCACGTG
ATTGGCGAGGAGGCCGACGACGACGTGCCCGAGTCCAACACGGACACGGACCTGTTTGCT
GAGGCCGTGGCGCAGCAGGGCCAAGGGGCGTCTGTGGCGCCCAACACCTCTGCGCTCGAC
TTTTTGCGGGACAACCCGCAGTTCATCGAGATGCGGCGGATGGTGCAGCAACAGCCTCAT
CTTCTGGAGCCGTTGATCCAGCAGCTGGCGGCGTCCAACCCCCAGCTGGCTGCTCTCATC
ACCCAGAACTCGGAGGCATTCCTGCACCTGCTAGGCGAGGGTCTGGAGGAGGGCTCTGGC
GGCGTGCCCGAAGGTACCACCGAGATCCAGGTGACTCCCGAGGAGAGCGACGCTATCGAG
CGTCTGGCTGCTCTGGGTTTTGAGCGAAACCTCGTCATTCAGGCGTACTTTGCCTGCGAC
AAGAACGAGGAAGTGACCGCCAACTATCTGTTGGAGCACGGTTATGACGACGACGAGTAA
GCTGGTAGTCCATGTCCCATGGCTGGCTAGTTGGAGGAGGGGGTGGTGGGTGAAGCACGC
CTCTGGCTCTGAAGCGGTCGTTCCGCGGTGGCATGGCATTGCGGCACGGCACTGATACCG
CTGTACGTAACAACAGCGGAGTGGCTCCAACCATAAATTTGTATAGTGTATGGTATTCGG
TGGTTATGAGTGGGTCGGTAGGGGTAGATAGGATGGAGGTGTAGACTGCTGTAAATCGAC
AACCATTCATTGTTCATTCTGATAACTATGACGCAATGGTTGGCTATCGTCAGGGTTGAT
TGAGTAAGTAGCAACTACGTGGCAATGAGGAGATGGCAGGACTTGGATATTGGTCTTAGT
TTTAATTTGATTTAAATTAATTTTATAAATATTTCAAGCC

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D16401g_CDS-001

Protein length: 360 aa.
Product: UV excision repair protein rhp23 (RAD23 homolog), putative

>YALI0D16401g_CDS-001 MLVKLRDTKRQQWTVDVEPSDTVETLKTKNAEGKDYGVGDQKMIYSGKILANTTSIESLN
LKEDAFIICMISKPKVKAAAAAPAAAAPVAAAPAAAEPAVAPVTPATSRSVATPGAPTNS
GNVVGNTETPTTGGADASTTGDIGAESGPAASATAAVTTAINNMVDMGYPRDQVEAAMRA
AYNNPERAVEYLLTGIPDHVIGEEADDDVPESNTDTDLFAEAVAQQGQGASVAPNTSALD
FLRDNPQFIEMRRMVQQQPHLLEPLIQQLAASNPQLAALITQNSEAFLHLLGEGLEEGSG
GVPEGTTEIQVTPEESDAIERLAALGFERNLVIQAYFACDKNEEVTANYLLEHGYDDDE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG