YALI0D15950g

Overview

Description similar to uniprot|Q8S8M1 Arabidopsis thaliana Putative retroelement integrase, pseudogene
Locus type CDS
Locus tag YALI0D15950g
Pseudogene This locus may contain pseudogene(s)

Location

Species Yarrowia lipolytica Positions 1973390..1973836
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 447 (nuc.)
Previous locus YALI0D15939t Next locus YALI0D15972g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D15950g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D15950gYALI0D15950g_mRNA-001YALI0D15950g_CDS-001

Nucleotide sequence

 

>YALI0D15950g
TACCGAGACCGGGGGAGACATCACGAGATCGTCCTCGACCAACTACACGGAGCACAATGG
TTTACGTTCCTCGACCTCCAACCCGGATATCATCAAGTCCGTCTCCGAGAGGATGACTTC
CACCAGGCCGCATTCAGCACGCGCTACAGCCTTTTCGAAACCATTGCTATACCTTTTGGC
CTCTGTAGCGCACCAACCCACTTCCAACGTATGATGGATCACTACCTACGAGAACTCATC
GAACTAGACGTCTGTGTGGTGTACATTGACGGCATCCTCATCTACAGTCGGAGATCTGAG
GAAGACCACATTGCCACCGTCCAAAGCGCGTTCAAGATCATTGAAGCAGCTCAGTTGGTG
GTCAATCTGCCGAAATGCAGGGTTATTCGCCACCGACATCGAATTTCTGGGTCACCCGTA
ATGGCCTCCGTCCTGCTACCCTCCTAG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D15950g_CDS-001

Protein length: 149 aa.
Product: Retroelement integrase, putative

>YALI0D15950g_CDS-001 YRDRGRHHEIVLDQLHGAQWFTFLDLQPGYHQVRLREDDFHQAAFSTRYSLFETIAIPFG
LCSAPTHFQRMMDHYLRELIELDVCVVYIDGILIYSRRSEEDHIATVQSAFKIIEAAQLV
VNLPKCRVIRHRHRISGSPVMASVLLPS*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG