YALI0D15246g

Overview

Description similar to uniprot|P12753 Saccharomyces cerevisiae YNL250w RAD50 DNA repair protein
Locus type CDS
Locus tag YALI0D15246g

Location

Species Yarrowia lipolytica Positions 1851017..1855644
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 4628 (nuc.)
Previous locus YALI0D15180g Next locus YALI0D15268g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D15246g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D15246gYALI0D15246g_mRNA-001YALI0D15246g_CDS-001

Nucleotide sequence

 

>YALI0D15246g
ATGTCTTCGATTTCGAAAGTGAGTACAAAGACGGCTTTTTTTTGCCACGCGAGAGCAGGC
GGATCATGGGATTCCTCACATAAATTTTTGCTCATCTTATCGATCAGAGAAACAACAAAC
CGGAGGTGCAGTCGTGCAAGGTGTGTGTGTGTGTGGAGGAAGACTGCGAAGGCCAGAAGG
GTGTCTTGTGATTAGCATCAGCTATATCACAGTTTCTGGCCTTTCACTTGATCAGAACAT
GTCTGGGAGTGTTAATTTTTGGATCTGGAAGGACTTTGCTGATGTATTGGTGTACTTCCA
AAGTTGATGTATTGTGCGTGAATCTTTGCAGAGATTGATTTACGTAACGATCAAATGATC
CATCTCTATCAACACGAGGATCCGTTCGAAGCCAACGGTAGGAGGCTTACGATTGAGTAA
AAATGTGCTCCGCTTTATCTGATCTGATCCATGGCGATTGGACATTCTCGTGGCACTGAT
CTTGATCTATATTGTTTTCCTTTATCTCATATTTCTTTCATCCTGTCGCATGTCCTCCAT
CGCAATAGCTACCGCTCAATTCTGGTCACATGGCTGCGGAAATCATTAAGAGCTCGTACC
ACTGCAAGTCACACACCAATCAATACTAACTCAGCTTTCCATTCAGGGAATCCGTTCTTT
CGATAATACCGAACGTGAGACCATCACCTTCAACAAACCATTGACACTCATTGTTGGCCA
AAATGGTTCTGGAAAAACCACCATCATCGAATGTCTGCGATACGCCACTACCGGTGACCT
TCCTCCTCACTCCAAGGGAGGTGCTTTCATCCACGATCCGAAAATTTGTGGAGAGAAAGA
AGTGTTAGGACAAGTTAAACTGGCATTCACCAACGTCAATGGCATACAAATGATATGTAC
GCGAACGATGCAGGTTCTTGTTAAGAAAAATACTCGTCAATTCAAGACTTTGGAGGGACA
GCTGATGGCCAGTAACAACGGAGAGCGTACTACTGTGTCGACACGGTGCGCAGAACTAGA
CGCCCAGATGCCGCTCTATTTGGGTGTCTCGAAGAGCATTCTCGATTATGTCATCTTTTG
TCATCAGGAGGAGTCACTCTGGCCGCTATCCGAGCCAGCCGTGTTGAAGAAGCGGTTTGA
CGAGATTTTCGAGGCTCTCAAATTCACAAAGGCATTGGATTCTATCAAAAGTCTCAGAAA
AGAAAAGAATGTGGAGATCAAGCTTCAAACACAAACGACAGAGTACCTCAAAGCAGATAA
GGATAGGGCCGATAAAGCTGCTGAGAAGGCGAATCTGCTGCTCGAGAGGATTGAGGATTA
CAAGTCCCAGGCGGACGAGCTTGAGACCAAGATGGAGATGGTGACAAAGCAGTCCGATGA
GCTGTTTCAGAGTAACCAGCAGTTTCAGCAGGTGTTGGCAGAAGTCCAGCAGCTCAAGAG
AGATCGAGTGGTGGTTGGTGAACAGAGGGAGAGGCTTGAGAAGAACTGTACCGAAGTGCT
GACAGTTTCTGATGACGAGTTGCAGAAACAGGTGTCTGAATTCGACTCGCGACTAGATGA
CCGACGAGAGACCGTGTCTGGACTCAAACAGGATTCCGAAGATGCTAGAAAAGACATGGA
GGGTCATCGCTTAGAGTACAACTCTGCCATCGTTGAAGTGGGTCAATGGGAGGCCAAGAA
ACAGGAGCTGGAGAACCAGATTAACGCCAGAGAATCTCTACTCGAGGAGATTGGTAAGAA
ATGGAACACTTCGGACTTGAATGAATTGAGATCTGACCTCAAAAGTGACCTTGAAAGGGT
CAAGAAAGAAGCAGAAGCTGAAGAGGGTAATCAGACCGACAAGATCAGCAAGCTATCCAC
TGCTTTGACGGAAAAGAAGGGACAAATCAACCACGACAAGGCTTCCACTCTTTCCTATGA
AAATGAGGTCAGGCGTCTGCAAGATGAGATGGATACCATTCCGACGGTCGAAGGAACGAT
CGCCTACGAGGAAAGCGTGATTCAGAAACTGGAGGAGAAGTTGGCAGGACTTCAGGGTAA
TTCGCAAGGGGAGGAGGCGAGATTTGAAACTGAGATTGAGTCATGCGATGAGCAGACCGA
AGTGCTCAGTAAACGGTTGGAGAAATGTAATTCTGATCTAGCCGAGTTCAATAGCAAGTC
GGAGAAGCGAGCTGAACACCGCATGCTGGTGTCGGAGCTGGCTAAGCAGCGGGGCGTGTT
GCGGGGCGTGGAAGATGCGCTATCCAAGCAGTATGGTGAGGTGGGCGTCACGGACGAGAA
GACTTATACAGCCAAGCTGTCAAGTTACCAGAATGCGGTGGAAAAGGGGCAGGGGGCTGT
ATCCAAGTCACGTGATTCGCTAGCAAATCTCACCACTCGTCTTGACATCTTAAACAAGGA
ATCACTTGTCAAGGACGCAACCCTCAGTGAGCTTTACGAAACCATTTCTGCTGTTCTAGG
CGAAGGGGAGGACAACATTGATGACTACGAATCGACGCTAGAGAACCTCTCCAATGACCT
AGAGGTCGCCACCCAGAACCGGGAATCCACAATGTTCACCGCGAGGTACTATGAGACTGC
AGTGAAGCTTGCCAAGTCGGCTCAACACAACTGCTTACTTTGCTCGCGTAAGTTCTCGGA
CACTGAACTGACTGATTTTCTTGCCCACGTGGAAGAGAAGACTATATCTCTTCCCGATAC
CAAAGAACGGGCTGATAAAGAATACCAGGATATCAAGTCCGATTTTGATAACGTCCAGGG
TATTTCCGGAGAGGTGCGGGAGTGGAGAAACTTGAAGGAGAGCGTGGAGAGTGTGTCTGC
ACAGCTCAAGAAGCTCAAACAGGAGGTCGTTGAAGGCCAATCGGCTTTTGAAAAGGAGGA
GGAGTCACTGTCGCTGCTGGAGAGTCAGCTGCGGGATTTGGAGGTGCTGAAGAAGGCTGT
TGAAGACGTCAAGCGACTAAAAAGCGACGTGGCTTCTAAAGAAAAGGAGTTGACCGACTT
CGAGGGTGAATTCTCGACCCTGATGGACTTCTCTGAAGAATCAACCTCTGATCTACCTTC
TTTGGCTTCCTCTTTGAACTCGCAAATCAAGAGTATCAACCAGAAGCGTCAAAAGTTGGT
AGATGATAGAGAGGCCTTGAGAAAGCAGTTCTCCTCCCTTCAAGGCCAGATATCGGACAA
AAAGTTGAGTCTCAGTACCCAGAAGAACCAGCTAACCAAGAAGACAGGGCTTCAGCAACA
AATTTCGGGTCTGAAGACGAAGATTGAAGAATGTCGAGCTCGAATCAGAACAGTCCGAGA
GGAGATTGAATCGATTGAGCCTAAACTTCAGTCACTGAAGAACGAATTGTCTGAAATGAG
GGTGACTAACGGAGACAAGATGGAGGCTATTTCCGACAAGCTGGAGGATGTCAAGAATGA
CGCCAATCAACTGAGCCATATGAGCCAGCAGATCCAGCAGCTGGAGGAGTTGGACATTGC
GAGTATGCTGACAAAGACTGGAAGACGAGCAGATTCAGCCAAGGGCGAGGTCGAGAACCT
GACTCAGCGCATCACTCAGCTGGGCGAAGACATTGCCACTCAAGAGAAGGCCTTAATTGA
CTTGAAGGGACATCAACGTAATCTGCAGGACAACTTGGAGGTTCGCCGACTAACTAACGA
GATGAGTCAGATTGAGGGGCGTATTCGCGAATTGGACGAAACAAAGGCTGTCCGGGATCG
AGACGAATACCAACAAAAGTCCCAACAGTTGCGATCACAGCACTCTGCCTATTCATCTAA
ACACGCTGGCCTGCTTGGAGAAATGAGGCAGATGGATGACCAGCTGAGAAATCTCAATGT
GGAGTTGAAATCTGAGTTCTTGGATGTCCACGAGAAGTACAGAAAGGCGTTGATTCTTCT
GAAAACCACCACAGTTGCCAACGAGGATCTTGGAAAATACGGAAAAGCACTTGACTCCGC
CATCATGCAGTACCACTCTATGAAGATGAACGAGATCAACACGATCATTGATGAGCTGTG
GAAAGCCACGTATTCCGGAACAGATATCGACACGATTTTGATTCGATCAGATGAGGACAA
GCCTGGAGCTGCGAAGAACAGGTCCTACAACTATCGAGTAGTTATGGTCAAGAGCGACGC
GGAACTCGATATGAGAGGGCGTTGTTCGGCAGGTCAGAAGGTGCTGGCTGCCATTATCAT
TCGACTTGCGCTGGCCGAGTGTTTTGGAATCAATTGTGGAATGATTGCTCTCGATGAACC
TACAACCAACCTTGACAGTGACAACATCGAGTCGCTTGCTAAGGGTCTCAGTAACATTAT
TGATGCTCGAAGCAGTCAGAAGAACTTCCAGCTGATTGTAATTACCCATGACGAAAAGTT
CCTGACCCACATGGCAGCTAGCAAACACACTGATCATTTTTACAGAGTGAGCAGAAACGT
CAGACAGAAGAGCAGCATCGAGTGGTGTCCCATTAGTTTGATCCAGGACTCATAAGAAGC
CATGGTAAGAGTGCGACCTGTGGAGCTCATTGGCGCGCGTGTCCAACTACTCGGACCGCA
ACTAACCAACTACATTTGAAGAAGTAGCATGATGTAAGCATTGAATGTGAGAACAAGTAG
TGATGGTT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D15246g_CDS-001

Protein length: 1293 aa.
Product: Subunit of MRX complex with Mre11p and Xrs2p, putative

>YALI0D15246g_CDS-001 MSSISKLSIQGIRSFDNTERETITFNKPLTLIVGQNGSGKTTIIECLRYATTGDLPPHSK
GGAFIHDPKICGEKEVLGQVKLAFTNVNGIQMICTRTMQVLVKKNTRQFKTLEGQLMASN
NGERTTVSTRCAELDAQMPLYLGVSKSILDYVIFCHQEESLWPLSEPAVLKKRFDEIFEA
LKFTKALDSIKSLRKEKNVEIKLQTQTTEYLKADKDRADKAAEKANLLLERIEDYKSQAD
ELETKMEMVTKQSDELFQSNQQFQQVLAEVQQLKRDRVVVGEQRERLEKNCTEVLTVSDD
ELQKQVSEFDSRLDDRRETVSGLKQDSEDARKDMEGHRLEYNSAIVEVGQWEAKKQELEN
QINARESLLEEIGKKWNTSDLNELRSDLKSDLERVKKEAEAEEGNQTDKISKLSTALTEK
KGQINHDKASTLSYENEVRRLQDEMDTIPTVEGTIAYEESVIQKLEEKLAGLQGNSQGEE
ARFETEIESCDEQTEVLSKRLEKCNSDLAEFNSKSEKRAEHRMLVSELAKQRGVLRGVED
ALSKQYGEVGVTDEKTYTAKLSSYQNAVEKGQGAVSKSRDSLANLTTRLDILNKESLVKD
ATLSELYETISAVLGEGEDNIDDYESTLENLSNDLEVATQNRESTMFTARYYETAVKLAK
SAQHNCLLCSRKFSDTELTDFLAHVEEKTISLPDTKERADKEYQDIKSDFDNVQGISGEV
REWRNLKESVESVSAQLKKLKQEVVEGQSAFEKEEESLSLLESQLRDLEVLKKAVEDVKR
LKSDVASKEKELTDFEGEFSTLMDFSEESTSDLPSLASSLNSQIKSINQKRQKLVDDREA
LRKQFSSLQGQISDKKLSLSTQKNQLTKKTGLQQQISGLKTKIEECRARIRTVREEIESI
EPKLQSLKNELSEMRVTNGDKMEAISDKLEDVKNDANQLSHMSQQIQQLEELDIASMLTK
TGRRADSAKGEVENLTQRITQLGEDIATQEKALIDLKGHQRNLQDNLEVRRLTNEMSQIE
GRIRELDETKAVRDRDEYQQKSQQLRSQHSAYSSKHAGLLGEMRQMDDQLRNLNVELKSE
FLDVHEKYRKALILLKTTTVANEDLGKYGKALDSAIMQYHSMKMNEINTIIDELWKATYS
GTDIDTILIRSDEDKPGAAKNRSYNYRVVMVKSDAELDMRGRCSAGQKVLAAIIIRLALA
ECFGINCGMIALDEPTTNLDSDNIESLAKGLSNIIDARSSQKNFQLIVITHDEKFLTHMA
ASKHTDHFYRVSRNVRQKSSIEWCPISLIQDS*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG