YALI0D14740g - RIM13, PalB

Overview

Description uniprot|Q9HFC8 Yarrowia lipolytica YALI0D14740g RIM13/PalB Signalling protease involved in Rim101p activation
Locus type CDS
Gene names RIM13, PalB
Locus tag YALI0D14740g

Location

Species Yarrowia lipolytica Positions 1794141..1796599
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2459 (nuc.)
Previous locus YALI0D14696r Next locus YALI0D14762g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D14740g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D14740gYALI0D14740g_mRNA-001YALI0D14740g_CDS-001

Nucleotide sequence

 

>YALI0D14740g
ATGCTGGCAATAGCATGTAACGACGACAAAAAGGCGCAGGAGATCCTCGTTTCGCTTCTC
CAGACGTACCCTGATTTGGTGGACTATGCGAAAAGTATTTCTCCAGCAACTGGCAAACTG
GTACTTCGACAGGCGAAAAGAAGCATGGATGCCTACGATTCTATAAAGAAAGGTGGCTCG
GTACTCTCTCTGGCTGAGAAAATTGTCTACTTGTCATCGAGAACCAATTACGGATACGCT
TTACCGTGGGAGTACGCGACTCCGGTGTCTGCACTGAAAAAGAGCGATGATCTGTACGTG
GACGCAACTGATGGAGGGTTGCGACAGAGCCAACACCGAGACGTGTCGTGGCTGCGTATT
CCACACGTCTTTGCGTCGTCAGATGCCGTCTTCACCTGGTCTGGGTTCGAAACACTGTAT
CAAGATGGCCTGGAAAACTGCTCTTTTGTGGCGTCCCTCCTGTCGATCGGAGTTATGGAA
AAGAGATGCAATTACAGTCTGCTGAAGGAGGCTCTACTCGACAAGTCTTCAAACCATCAC
TTGGGAACCCCCCCGAGTTCTGGAAGATACGATATCAAGCTATTCATCAACGGCTGTGAT
CGTAGAATCACCATCGATGACCGTTTTCCAATCAGAGAACCGTCACTACCAAATATGTAT
CTTCGGTCATACACAAATCCCACTCTGGTGTGGCCAGCATTACTGGAAAAGGCCTTTATG
AAAGTTTTGGATGGATATGACTATGCCGGAAGTCATGCGGGAGGGGATACCTTCGTCTTG
TGCAAGTGGTTTCCCGAGTTTGTCTCTCTGACGTCATATCACGATACCAATGGGCTCTGG
AGGTACATTTACGACTCATGGCTCCAAGGGGATGTGTTATTGTGTCTTGGAACAGGTAGT
TTTTCGCGTGAGGAAGCAGACTACAAGGGGTTGCTTGGAGAGCACGACTATGCGGTTCTA
GAGTTGAGGGAGATTCAGGATGGGTGTAACACTGCCCATATTCTTCGCATTCGAGATCCA
CTTCTCTTTGGACCCTTCTCCAACCCCAAGAACCCGTTAGTGGAGGAATCAAACCGACTG
GCAAAGCTGGTGGATGGCAAAAATGTCGATATGGCTTCTAGGGGAGAAATTTGGATGGAC
TTCAACCAGGCCACACGGGAGTATCAGTCTCTGTATTTGAACTGGCGCCCTGAACGGTTT
TTTTGCCGTCTTGAACAGCATTTCTTCTGGAAGACCAGCGACATCATGGACTTTCAAATG
TGTGGCTCGTTTGTTCAAAACCCACAGTACACAATCACCAACAATGGTACCAAGACGGCC
ACTGGAAAGTTGGTGCTTCTGAGACACACTCAGGGACGCGAAACGGACGCCAAGAGTTTC
TGTTGCATTCATTTGTTTGAGGGAGCAACACGCGTTGTTCTTCAGGAAACAAGTCATGCA
GTCTACAAGGGCAAATTGATGAATTTGCATTACTACACCGTTTCTTTGACCCTCAAACCC
GGAGAGTCTACGACGGCTGTCATGGCATGTTCTGGAATGACGGATTCCGAACCCATGTAC
AGGTTCTCCTTGTTTCTCTACGCCAACAACCCCCTGACCATGTCCAAGCCCACTGCGCCT
CTGGCATACTCTCAAATCTTCAAAGGAAAGTGGTCAGAGGACCAGGCAGGGGGGAATTGG
GCAAAACCAATGTACATTCACAATCCCCAGTTTCTGTTGACTGTGAATGAACATTGTGAC
CAGCTGTACATTTACCTAACCTCGTCTTCCCGTCAACCCATAGCTGCCCAGCTTTTCTGG
GGTTCCAAGTCGCTCAAGGAGTATAAGGAGAGTGCGATTGAGACCTCTTCGGGCAAGTAC
AAGACAGGAAGCACTCACTTGAAGACCCGGAATATTGACGCAGGCTCCAACTTGATTCTC
ATAATCTCCACTTTTGATTCCGCTCCCCAGACTGACTACAACATCAGGGTGTTTTCCTCT
GGAAACTTTTCGCTCACCCAGCTGGCTCGACATACCGCGGGCAAGTTTACCAAGAGTCAC
AAGAGCAAGTTTTACAATAGCTGTTCGGAGCAGGTGGAATTCAGTGTGCAGCAGTCCACA
CAACACTTGTCTTTGGCAGCACGAATGATCAAAACACGACCATTCATCCGTTTGACAATC
AGAGAGGCACAAAGCAACACTGTGGTGGCCACGACAAACACCTTTTCCGACTCCATTTAC
GGTGTGCATCTAGACGGAGTGAGGGTCTCGAGAGGACTGGTGTATTTGGCTGTTATTGAG
AAGATGGAGCACAGCAACAACGAGCCTTATGTGATGGAGTTTGCTGCAGACACGTTGGTG
ACTTTGGGTCATTAGTACTAGCTAGAACTGGCCCAACTGCCCAGGTACTACAATTATATA
TTTGCATACCAACAACCTGGACTTTCAACGAGTCTGACAAAGAAACCAATATGATTATG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D14740g_CDS-001

Protein length: 785 aa.
Product: Signalling protease involved in Rim101p activation
Gene: RIM13, PalB

>YALI0D14740g_CDS-001 MLAIACNDDKKAQEILVSLLQTYPDLVDYAKSISPATGKLVLRQAKRSMDAYDSIKKGGS
VLSLAEKIVYLSSRTNYGYALPWEYATPVSALKKSDDLYVDATDGGLRQSQHRDVSWLRI
PHVFASSDAVFTWSGFETLYQDGLENCSFVASLLSIGVMEKRCNYSLLKEALLDKSSNHH
LGTPPSSGRYDIKLFINGCDRRITIDDRFPIREPSLPNMYLRSYTNPTLVWPALLEKAFM
KVLDGYDYAGSHAGGDTFVLCKWFPEFVSLTSYHDTNGLWRYIYDSWLQGDVLLCLGTGS
FSREEADYKGLLGEHDYAVLELREIQDGCNTAHILRIRDPLLFGPFSNPKNPLVEESNRL
AKLVDGKNVDMASRGEIWMDFNQATREYQSLYLNWRPERFFCRLEQHFFWKTSDIMDFQM
CGSFVQNPQYTITNNGTKTATGKLVLLRHTQGRETDAKSFCCIHLFEGATRVVLQETSHA
VYKGKLMNLHYYTVSLTLKPGESTTAVMACSGMTDSEPMYRFSLFLYANNPLTMSKPTAP
LAYSQIFKGKWSEDQAGGNWAKPMYIHNPQFLLTVNEHCDQLYIYLTSSSRQPIAAQLFW
GSKSLKEYKESAIETSSGKYKTGSTHLKTRNIDAGSNLILIISTFDSAPQTDYNIRVFSS
GNFSLTQLARHTAGKFTKSHKSKFYNSCSEQVEFSVQQSTQHLSLAARMIKTRPFIRLTI
REAQSNTVVATTNTFSDSIYGVHLDGVRVSRGLVYLAVIEKMEHSNNEPYVMEFAADTLV
TLGH*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG