YALI0D13464g

Overview

Description similar to uniprot|Q04500 Saccharomyces cerevisiae YML093w
Locus type CDS
Locus tag YALI0D13464g

Location

Species Yarrowia lipolytica Positions 1662259..1665272
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 3014 (nuc.)
Previous locus YALI0D13442g Next locus YALI0D13486g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D13464g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D13464gYALI0D13464g_mRNA-001YALI0D13464g_CDS-001

Nucleotide sequence

 

>YALI0D13464g
ATGGGAAAACGAAGCAAAAGCAGCCGGTCCGGGCGAACCACGACCGCCGGCAAGGTGTTT
TCGTCCAAGCGAGCCACGTCGTACAAAAACGAAACCGAGCCCTCCAAGCCCGTACCCAAG
TCTCGAGGCAAGCATGCTCTGTTGAACGCCTTTGAAATCGCCGAGGCTGAGGAGCGAAAG
AAGGCCCGTAAGAACGGGGAGGAGTACTCCGACGACTCCGAGGATCACGACATTGACGAT
GTTTACGATGACGGTATTGTTCGGTTCAACAAGGACGGAACTAGAAAGGTGTATCAGCCT
GGCGATGAGGAGGAGGAGGAAGACGACTCGGAAATCGACTCTGACGAGGCGTTTGGCTCT
GACGACGGCGACGAGGAGATTCTGGACTCTTTCGGCGTCAAGTCCAAGGCCAAGGCCAAG
TTCAAGGCCATGGAGGACGAGTACGACTCTGTGGACGAGGAGGAGTTTGTGGATCTTTCC
GAGGCCTGGGATCTGGACGATCGTCAGCAGGAGAACCTCAAGAAGAAGAGCGGTGAGAAG
GCTGCCCAAAAGGAGGATGCAAAGAAGAGCTCAAAGACCAAGGCTACCACTTCTTTCAAT
CTTCAGGAGGAGGAGGATGACGAGTCACATGGAGATGATGAGTCTGAGGAGGGAGGATCT
GAGCAGGAACAGGATGCGGATTCCGAGGACGTTTCTGACGGAGAGGAGATCGACTCTGAT
AACGACGACGATTCTGATGACGGTGACGACGACTCTGATGAGGAGGACTCGGACGGATCT
GTCTTTTCCGATATCGATACCGAGTTTGATGAGGAGAAGGCCGACAAGCTTCGATCTCTC
ATTTCCAACATGTACGAGAACGACGAGGATGCTGAGTACGAGAAACGACGACGATACGAG
AACAACAACCAAGAGGAAAATGAGTTTGGCGTGACAGTGTCGAAAAAGAACAATGATGGC
AAGCTGTCTCTTTCGGACCTGACTTCAGGTGTGGACAAGAAGGCAGCTGCTAGTCTGTCT
CTTCTTGGCAAGCCCGACGGCAAGTCCAAAAACAAGCCCCAACATGTGGCTGTGCCTCTC
AGTAAACGTCTCCAGGACAAGGTGGAACGTAAGGCAGCTCTTGATCTGACGCGAGAGGAG
CTGACCAAGTTCGACGACCTGATTGCCCAGGACGAGGATGCTGAGCATCTGGTTTTCCCC
CGTCTTCCCGTCTACGACTCTGATGAGGAGGCCAAGCAGCTGCCCAACACCGGTATTTCT
GCGCTGGCCCCCGAGAGTGCTATGGAGAAGAAGATTGCCGGTATCCTCAAGACTTCTGCT
CTTGCCGACGAGTCGCAGGCACAAAAGTTTGAGGAGCTGGCCACCAAAAACATGTCTATG
GAGGAGCTAGCTGCCCGACGAAACGAGCTTCGACGAATGCGAGAGCTAATGTTCCGAGAG
GAGCAAAAGGCGCGGCGAATCAAGAAGATCAAGTCCAAAACGTACCGAAAGATCCACAAG
CGAGAGCGAGAACGGCTCCGAGACGCCATGATGTCCGACGAGGAGAGTGACCAGGAGGAC
CACGACATCAAGCGAGCTCAGGAGCGAATGTCGCTCAAGCACAAGAACCAGGGCAAGTGG
GCCAAGCGAATGGTATCGCAGGGTCTGACCAAGGATGCCGAGACTCGAGGAGAGATGGAG
GAGATGCTTCGACGAGGTGAAAGTCTGCGAAAGAAGATGTCTGCTCGGGACGACAACGAT
GGCGACGAGCAGATTGACTCTAATCTGGGCGACGACCAGTTTCTGTCCCAGAACAGAGAC
GCTCTGGTTGATCCTGATGAGCCTGCTGAGGGAGCTAATCTGGGCAAGGGTCTGCTTGGC
ATGAAGTTCATGCGAGAGGCTGAGGCTCGTCAGAAGACGGAGAACCAGCAGCGAATCCAG
GAGCTCGATCGAGCCAAGGCCAACTGGGAACTTGGGCAGAGTGACGACGAGGACGAAGGT
CGAGTTGACACTGCCAACGAGATTCTCAACCAGGGTCGACGAAAGTACGCGCCCGGAACC
AAACGGTCTATTGCCGATGTGCTTGCTGTCAAGATTGACTCTGAGCGAAAGGCTGATCTT
CAGTCTGATGATGATGAGGATGATAATGACGACAGAGATAACGACAACGTGACTACTGTG
GTCAAGAGCGACAAAAAGAAGGAAGGAGGTGCACAGGACGACGATTCTGATTCAGATGAC
GACGCCTCCAACCCCTGGTTCACCGAAACCAACATCCACAAGAGCAACAAGGTCAAGCCT
GTGATGGAGGCTGAGGCTTCTGCACGAGACCGGCTGGCCCACAAGGTGGCCAAGCATCAG
AGCCGGGTGGTGGAGAGTGCGAAGAGCAAAAAGGCCCGCAAGCAAGATAACATTCTCATT
GACACTTCCGATACTCTTGATCTCGTGACTCAGGATCGAGAGGCCGACACTGACAAGGGT
ATCTCTTTCAAGCAGGATATGATCAAGCGGGCCTTTGCAGGAGACGATATCGTCGAGGAA
GAGTTCATGGCCGAAAAGAGACAGCGAATCGCCGACGAAGGAGATCAGGAAATCGACATG
ACCCTGCCCGGGTGGGGAGGCTGGGGAGGAGAGGGCATGAAGGCGCCCAAGAAGCGGTTT
GTCAAGAAGATCCAGGGTGTGGCCGTCGAGAAGCGTCAGGATCGAGATCTCAAGAACGTG
ATCATTTCGGAAAAGTCGGACAAAAAGTCGGACAAGTACCAGGTCAAGTCGGTCCCCTAT
CCCTTCGAGTCTGTCGAGCAGTACGAGGCCTACCTCAAGATGCCCATGGGCCAGCAGTGG
ACCACGGAGACTACCCACCAGAAGCTCATCAAGCCCCGAGTCATTGTCAAGCCCGGAGCT
ATCATCAACCCTCTGGATGCTCCTCAAAAGTAGTGTCCTTCATTCTAAAATCTCGTCAGC
CATATATAGAGGCTTGGTATATATTTAAGTGTTATGAAGTATGCACACACGTAGTGTGCT
AGTGATCGATGCCT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D13464g_CDS-001

Protein length: 971 aa.
Product: Subunit of U3-containing Small Subunit (SSU) processome complex, putative

>YALI0D13464g_CDS-001 MGKRSKSSRSGRTTTAGKVFSSKRATSYKNETEPSKPVPKSRGKHALLNAFEIAEAEERK
KARKNGEEYSDDSEDHDIDDVYDDGIVRFNKDGTRKVYQPGDEEEEEDDSEIDSDEAFGS
DDGDEEILDSFGVKSKAKAKFKAMEDEYDSVDEEEFVDLSEAWDLDDRQQENLKKKSGEK
AAQKEDAKKSSKTKATTSFNLQEEEDDESHGDDESEEGGSEQEQDADSEDVSDGEEIDSD
NDDDSDDGDDDSDEEDSDGSVFSDIDTEFDEEKADKLRSLISNMYENDEDAEYEKRRRYE
NNNQEENEFGVTVSKKNNDGKLSLSDLTSGVDKKAAASLSLLGKPDGKSKNKPQHVAVPL
SKRLQDKVERKAALDLTREELTKFDDLIAQDEDAEHLVFPRLPVYDSDEEAKQLPNTGIS
ALAPESAMEKKIAGILKTSALADESQAQKFEELATKNMSMEELAARRNELRRMRELMFRE
EQKARRIKKIKSKTYRKIHKRERERLRDAMMSDEESDQEDHDIKRAQERMSLKHKNQGKW
AKRMVSQGLTKDAETRGEMEEMLRRGESLRKKMSARDDNDGDEQIDSNLGDDQFLSQNRD
ALVDPDEPAEGANLGKGLLGMKFMREAEARQKTENQQRIQELDRAKANWELGQSDDEDEG
RVDTANEILNQGRRKYAPGTKRSIADVLAVKIDSERKADLQSDDDEDDNDDRDNDNVTTV
VKSDKKKEGGAQDDDSDSDDDASNPWFTETNIHKSNKVKPVMEAEASARDRLAHKVAKHQ
SRVVESAKSKKARKQDNILIDTSDTLDLVTQDREADTDKGISFKQDMIKRAFAGDDIVEE
EFMAEKRQRIADEGDQEIDMTLPGWGGWGGEGMKAPKKRFVKKIQGVAVEKRQDRDLKNV
IISEKSDKKSDKYQVKSVPYPFESVEQYEAYLKMPMGQQWTTETTHQKLIKPRVIVKPGA
IINPLDAPQK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG