YALI0D12452g - UFD2

Overview

Description uniprot|Q6C9B7 Yarrowia lipolytica YALI0D12452g UFD2 Ubiquitin fusion degradation protein, putative
Locus type CDS
Gene name UFD2
Locus tag YALI0D12452g

Location

Species Yarrowia lipolytica Positions 1551948..1555311
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 3364 (nuc.)
Previous locus YALI0D12430g Next locus YALI0D12474g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D12452g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D12452gYALI0D12452g_mRNA-001YALI0D12452g_CDS-001

Nucleotide sequence

 

>YALI0D12452g
ATGTCATCAGCAGAAGAAGTGAGTGAAAAAGAAATGGAGAACGATGAACCGAAAGTACAG
CCGTGCTAACACAGATTCGTCTCAAGCGTCTAGCTCGTCTAGGAGGAGGAGCTTCCAGTC
CCTCTCCTGGTCCTTCCGAGTCCAGGAAGGCAGAGGGGACACCTAAGGAGGAGGTGAAGA
AGGAGGTGAAGGAGGTGAAGGAAGTGAAGAAGGATGAGCCCAAAAGCACACCTGCGATCA
AACCCAAGATCAAGATTGTGCCCAAGGCCGCTGCTTCTGCCGCCACAGGCACATCGACCC
CAAAATCCGCTGCACCACGACCAGCTCCAGCTCCCTCGGCTTCGCTGACCGTGCCGTTCC
AGCAGTACGAGCAGGACGCAATTGAAAGCATTCTGCGAATCACAGTGCGAGACAAGCAGC
GATGCACGCAACTTGCATCGGTCAAGGAGGAACTGGAGTCGGAAAACAAGCCCGTGGCGC
TCTCCAGAGACAATCTCGAAGATGCGCTCTTCAGCCACCTCACAGGATCCAAGGCAGTCT
TCAACTATCTCATGGAGAGCTTTCTGCGGGCCAAGAAAGACTTGGCAGTGCTCAACAAGG
CTGGCACGGACGCTGTCGATGTAGAGCCCAAGAAAGAGCTGGTCAGAAATATTATGGAAA
TGACCACCCGATATGGACTGCTGTTTGTGTCTGTTCCAGACATGTACGAGCAGGCCCAAG
GCATTATGGAGGTGCTGAAACTGTCACAGAACGGCTCATTGTCGTGGGAGTTCGTGGACG
AGATCTTCTCACGTGCCCAGACCGACGGAGACATGGGCTCTGTTGCGGGCAAGATTCTGC
AGGACGTCAACGGGCTGATTCTCAGCGCCAATCAGGACGCCTCCCAGTCGGCCACCGCTG
CTCTCTACTTTGTGTCGCACCTGTTCAGCAACAAGCTGTTTGCTTCTGCTGTGCCCGAAA
TTGAAGGCTTTGTCGAAAGTGGCACCAACGACGAAAAACCCGCAGACATTGAGAAGAACC
CCCATGGTCTCGGCCCCGTTTTTGCCATTTCTCCTTTGCATGGTTCTACCGCTCTCACCT
TCTTCCCCATCGGTACTCCTGAGCAAATGATGGATCCCCGTGGCAACGCCGCCAACGGAG
TGCGAGCCGAGTCGCGAATCGTGCAGGACCAGCTGTTCCAGATTGTCGACAAGATTGTGC
GGGCGTCTCCACAGGCACGAGACTGTATTCTGCAGTACTTTGGCCGCGTGCTCAAGTGCA
ACCACAGAAGACGAGCCACTCGACTGCAAGAAGGCACCACATCTTCTGACGGCTTTCTGC
TCAACATATTTTTTGTGTTGCTCAAACTGGCAGACCCGTTTGTCGATAACGCCTGTTCCA
AGATTGACAAGATTGACATTGACTACTACAGCCGAACCAAAAACGCGGTAATTGACATTT
CCGAGGAGACCAAGATCCACGCCGACTCCACCGAGGCCGCAGAGTACTACGGAGACGAAA
AGAATGCCGATAAGAAAGACCTGGCTCCTAACTTCATTTCCCATGTGTTTTTCCTCACCG
CCGGATACCTATACTACGGTTTTGGAGGTGCCCAGCAGCAGGTGACACGTCTCAAGGAGC
ACCATGACCAGGTTAGAGACTACCTTGACAACTCGCGGATCCAGTATGCCAATGTTCCCG
AGGCTCAACGGGGAGCAGTGAACATGCAGCTACAGAAGGTGGAGAAGATGGTGGGTTCTT
TGGCGGCCCAGCGAGCAGCCATTCTGGCCGTCATCTCCGAGCAGGACGTGTGTGTCCAGG
TGCTGCAGTTTGCTATTTTCCAAATGCATTATCTCATCCGAGTTCTGGACCCCTCTCACA
CTTATCCCCTGGGTGGCGAAGTTACTCTGCCCCTGTACACTGGAGAGAACACGGGACCTA
TTGCTTACCTCCCCGAGTACCTAATCGAGGGTCCTGTTGGCATTGTAAACGTCATGTGTC
GTCACAACACCATTCTGGCCATGTTGTCTCCCTTGGTGGACGTTTCTGCTCTCGTCACCT
TTGGAGTGGTCTTTCTGCGACACTCGGACGTGATCAAGAACCCACATCAGAAGAGCAAGA
TTGTAGAGATGTTGTTTTGCGGCACCCAGCCCATCTACAACCAGAATGATGGCTTCTTGG
TGTCTACATTCAACTCGCAGAAACTGGCACTGGAGTCGCTTATGCATTCGCTCATGAACA
TCTATATCGAGTTTGAGCAGACTGGAGCACATACTCAGTTCTACGACAAGTTTAACATTC
GGTACTATGTGTCGCAGATCATCGAGTCTATCTGGAACAATGTCAACTATCAGAAGCGGC
TGGAAAAGGAATCCCATGACAACATTGACTTCTTTGTGCGGTTTGTGGCGCTGCTGCTCA
ACGATGTCACCTATCTCATGGATGAGTCGGTCAGCAGTCTCACGGAGATTCGGCAGATTG
AGGCGGAACTGGCTGCCATGACCGAGGAAGAGAAGAACTCCACTCACGCCCAGGAGCTGC
AGAAGAAGTTCAAGACAGCCGAGCGCAACATCAAGGGGTGGATGCCTCTCACCAACAAGA
ACATGAAGCTTCTTGATTTGTTCACCCAGGCTGTCCCCAAGTCGTTTGTATCGCCCGAAA
TCGTCGACCGACTAGCTGCCATGATGAACCACAACCTCAAGGCGCTGGTTGGCCCTCGAT
GTCGTGATCTCAAGGTCAAAAACATGCTAAAGTACGGCTTCGACCCCAAGGATCTGCTGG
TCAAGCTTTCCAAGGCTTACTACAACCTGCACAAGCAGGACGCGTTTATCCAGGCTGTGG
CTCGAGACGGCCGATCGTTTGACCCGGCAAACTTCACACGTGCTATTGAGCTCATCTCGC
GTTTCAACCTTATGCCTAGAGAGTACCTGGATCAGATTGTGGCACTTCGAGACAAAGCCT
CGGAGGTGGCTGCTCAGGACGAGGAGGACGAGCAGGACCTGGGAGATATCCCCGACGAGT
ACCTGGATCCTCTCATGTACACACTGATGACCAACCCTGTGATCCTGCCGTCGTCCAAGA
TCAATATTGACCTGGCTACCATCAAGTCGCATCTTCTGTCCGATCCCAAGGACCCCTTCA
ACCGAGCGCCTCTCAAGCTGGAGGACGTACTGCCCAACGACGAGCTGAAGTTGGAGATTG
AAACCTGGGTCGAGGAGAAGCGAAGTGCAGCCAAGACCAAGGATGCCGATGGGGATGTTG
ATATGAGCTGAAGAGGTTGGCTCATGTAATGTGGAAGGGTGTTGGAGTAGATGTAACGAC
TTGGAAGTTTGTAGCTATGAGTAAGAACGTATAATAATCAAATGAACTGGTTGTGCGTAA
CCGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D12452g_CDS-001

Protein length: 1065 aa.
Product: Ubiquitin fusion degradation protein, putative
Gene: UFD2

>YALI0D12452g_CDS-001 MSSAEEIRLKRLARLGGGASSPSPGPSESRKAEGTPKEEVKKEVKEVKEVKKDEPKSTPA
IKPKIKIVPKAAASAATGTSTPKSAAPRPAPAPSASLTVPFQQYEQDAIESILRITVRDK
QRCTQLASVKEELESENKPVALSRDNLEDALFSHLTGSKAVFNYLMESFLRAKKDLAVLN
KAGTDAVDVEPKKELVRNIMEMTTRYGLLFVSVPDMYEQAQGIMEVLKLSQNGSLSWEFV
DEIFSRAQTDGDMGSVAGKILQDVNGLILSANQDASQSATAALYFVSHLFSNKLFASAVP
EIEGFVESGTNDEKPADIEKNPHGLGPVFAISPLHGSTALTFFPIGTPEQMMDPRGNAAN
GVRAESRIVQDQLFQIVDKIVRASPQARDCILQYFGRVLKCNHRRRATRLQEGTTSSDGF
LLNIFFVLLKLADPFVDNACSKIDKIDIDYYSRTKNAVIDISEETKIHADSTEAAEYYGD
EKNADKKDLAPNFISHVFFLTAGYLYYGFGGAQQQVTRLKEHHDQVRDYLDNSRIQYANV
PEAQRGAVNMQLQKVEKMVGSLAAQRAAILAVISEQDVCVQVLQFAIFQMHYLIRVLDPS
HTYPLGGEVTLPLYTGENTGPIAYLPEYLIEGPVGIVNVMCRHNTILAMLSPLVDVSALV
TFGVVFLRHSDVIKNPHQKSKIVEMLFCGTQPIYNQNDGFLVSTFNSQKLALESLMHSLM
NIYIEFEQTGAHTQFYDKFNIRYYVSQIIESIWNNVNYQKRLEKESHDNIDFFVRFVALL
LNDVTYLMDESVSSLTEIRQIEAELAAMTEEEKNSTHAQELQKKFKTAERNIKGWMPLTN
KNMKLLDLFTQAVPKSFVSPEIVDRLAAMMNHNLKALVGPRCRDLKVKNMLKYGFDPKDL
LVKLSKAYYNLHKQDAFIQAVARDGRSFDPANFTRAIELISRFNLMPREYLDQIVALRDK
ASEVAAQDEEDEQDLGDIPDEYLDPLMYTLMTNPVILPSSKINIDLATIKSHLLSDPKDP
FNRAPLKLEDVLPNDELKLEIETWVEEKRSAAKTKDADGDVDMS*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG