YALI0D12012g

Overview

Description similar to uniprot|P39744 Saccharomyces cerevisiae YOR206w (RAD4) crucial for intranuclear movement of ribosomal precursor
Locus type CDS
Locus tag YALI0D12012g

Location

Species Yarrowia lipolytica Positions 1486891..1488991
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2101 (nuc.)
Previous locus YALI0D11990g Next locus YALI0D12034r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D12012g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D12012gYALI0D12012g_mRNA-001YALI0D12012g_CDS-001

Nucleotide sequence

 

>YALI0D12012g
ATGGGTAAGGCATCAAAGGCGACGAAAAAGTTCCAAAACAAGCATCTGAAGAAAACCATA
GATAAGCGACGTGTGGACCAGGCTGCCAAGGCCAAGGCCGTCAAGGGTCGACGTCCTGGA
GCTAGCGTCTCTGCCGAAGACAAGGTCGAGAAGGCTGCTCCTTCGTTTTTCGAAGACATG
TCTGTGGGCGACTTTATGAAGGGTGGATTTGAGGTTCCCGAAAAGAAGGGCAAGGCCGCT
GAGGAGGACGAGGACGAGGAGGAACTTGAAGACGAGGAAGACGAGGACGAGCAGGATCAG
ATTGAAGCTGACGACGACTCTGAAGGAGAGGCCTTCTCTGACGAGGACGAGGCCCCCGAG
ATGGACGACCCCGAGTTTCTCAAATACCTAAACGACGAGGAGAACGTGGAGGAGGACGCC
AACGCCGAGGAGGAGGACAAGGAGGAGGTGACACTGGCCATGGTCAAGAAGTGGGCATCT
GCCATGGAGAAGACTCAATCTACCGACGCTGCTAGAAACGCTCTGCGGGCTGCTAAGGCT
GCTCTAGCTTCTCAGGAGGATGAGAATGCTACTGCCAACTTCAAATACGTTATCAACGAC
ATCAAGGTGGTCACCAAGCTATTTGATGTGGTCAACAGGTGGGTGCCTGTGGTTCTGACC
AAGCAGCTGCCTCTCAAGCAGTCCAAGAAGGGTACCAGCGTTGTCGACGAGGAATCCGCC
ACCAACAACAAGTCTGCCACAGCTATCATCAAGTCGTATGGAGATGTCCTGCAGCAGTCT
TTGAGCACCACCACTGGAGCCGAGGAGACTATCCGGTCCATTGCTGCACTCAAAAAGGTC
ATGCCCTACATGCTGAGTCATCGAAAGCTCACTAAGAACCTCATCGCCTCCGTGTGCTAC
ATCTGGGGTACCAGCTCTGCCATTTCTGCCCGAGAGGCTGCCTTTGCTCTGCTAATTACT
GAGTCCAAGGAGCACTCCGGTACCTATGAGGCCATTCTGAAGGCCGCCTACGGACAGTTT
GTCAACTCGTGCAAAAACACCTCGTTCCACACCATGGGCACCATCAACTTCATGAAGAAT
ACCGCCGCCATGTTGTACGCTGTCAACGAGCAGCAGGCTTATCCTATTGCCTTTGACGCC
ATCCGACAGCTGGCCATCCACCTGCGAGGCTCTCTGACCAATAAGACTGCCTCCAAACAC
GCCTACAAGGCCGTCTACAACTGGCAGTTTGTGCATTCTCTGGACTACTGGTCCCGAGTG
GTTGCCGATACCTGTGACGCCGAGAACGAGGCCACTAAGGGCTCTCAGTCCCCTCTTCGA
CCTCTGCTATACCCTCTGGTCCAGGTCACTCTTGGAACGATCCGATTAATCCCCTCGGTC
CAGTTCTTCCCTCTGCGATTCTACCTGATCAGATCTCTGCTCCGAATCTCCCAGCGAACT
GGAGTTTACATCCCTTTGCTGCCTCTTCTCACAGAGCTGCTTAACTCGTCGGTCATGACC
AAGCCCCCCAAGTCTTCGGCTCTCAAGCCCCTGGACTTTGACTACGCCATCCGAGCCAAC
AAGGGCTATCTGGGCTCTCGAGTCTACCAGGAGGGTGTGTGCGACCAGATTGTGGAGCTG
GTGTCCGAGTTCTTTGTGCTTTACTGCAAGTCAGTGGCCTTCCCCGAGCTTGCCATTCCA
GCTGTAATCACTCTCAAGCGGTTTACCAAACGGTCCAACATCTCCAAGTTCAACCGCCAG
CTGCTGACTCTGCTGGATAAGATCGACGCCAACGCCAAGTTTATTGAGCAGAAGCGAGCC
AACATTGACTTTGGCCCCACCAACCGAGACCAGGTCAACAACTTCCTCAAGGACCTGGAC
TGGCAGAAGACCCCTCTGGGTTCCTATGTGGTGGTGCAGCGACAGGTGCGAGCCGAGAAG
CTTGCCATTCTTCGAGAATCGCAAGAACAGGACGCTAACGACGGAAACGAGTCCGACCAG
GTCGAGCTGGCCGACTTCAAGGACGAGCCCGAACAGCTCAGTGAGAGCGAGGAGGAGGAT
GAGGACGAGGAGATGGAGTAACCTAGTAGACTATAGACAATGCAATATGAATGAAATCAA
G

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D12012g_CDS-001

Protein length: 687 aa.
Product: Protein involved in ribosome biogenesis, putative

>YALI0D12012g_CDS-001 MGKASKATKKFQNKHLKKTIDKRRVDQAAKAKAVKGRRPGASVSAEDKVEKAAPSFFEDM
SVGDFMKGGFEVPEKKGKAAEEDEDEEELEDEEDEDEQDQIEADDDSEGEAFSDEDEAPE
MDDPEFLKYLNDEENVEEDANAEEEDKEEVTLAMVKKWASAMEKTQSTDAARNALRAAKA
ALASQEDENATANFKYVINDIKVVTKLFDVVNRWVPVVLTKQLPLKQSKKGTSVVDEESA
TNNKSATAIIKSYGDVLQQSLSTTTGAEETIRSIAALKKVMPYMLSHRKLTKNLIASVCY
IWGTSSAISAREAAFALLITESKEHSGTYEAILKAAYGQFVNSCKNTSFHTMGTINFMKN
TAAMLYAVNEQQAYPIAFDAIRQLAIHLRGSLTNKTASKHAYKAVYNWQFVHSLDYWSRV
VADTCDAENEATKGSQSPLRPLLYPLVQVTLGTIRLIPSVQFFPLRFYLIRSLLRISQRT
GVYIPLLPLLTELLNSSVMTKPPKSSALKPLDFDYAIRANKGYLGSRVYQEGVCDQIVEL
VSEFFVLYCKSVAFPELAIPAVITLKRFTKRSNISKFNRQLLTLLDKIDANAKFIEQKRA
NIDFGPTNRDQVNNFLKDLDWQKTPLGSYVVVQRQVRAEKLAILRESQEQDANDGNESDQ
VELADFKDEPEQLSESEEEDEDEEME*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG