YALI0D11000g

Overview

Description similar to uniprot|Q12277 Saccharomyces cerevisiae YDL111C RRP42 Protein involved in rRNA processing
Locus type CDS
Locus tag YALI0D11000g

Location

Species Yarrowia lipolytica Positions 1378713..1379790
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1078 (nuc.)
Previous locus YALI0D10989g Next locus YALI0D11022g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D11000g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D11000gYALI0D11000g_mRNA-001YALI0D11000g_CDS-001

Nucleotide sequence

 

>YALI0D11000g
ATGCCCTTCTCGCCAGCAGAAATCGACTATCTCCGCAAATCGCTCCAGGCCACGCCCACG
ATCCGACCAGACGCCCGAGAGCCCAACCAATTCCGGCCGGTGGATGCAGCGCAGAACTTT
TTGCCAGCAACAAACGGATCAGCCCGAATAAGAACGTCGGACGGAGGCGAATGCATTGTG
GGAGTCAAGGCCAAGGTGGTGAAGAACTCGTCCGTGGACGAACTGATTGCCGTGGAGGTG
GATATTGACGATATCAGAGATGACAGTCCCTTGCCCAAGCTGCTGTCTGCCGTACTGCAG
ACGCTCATTCTTTCCAGCATTGACACAAACCGGCTTCGTCTGACCCGGTCCAATTATGCT
TTCAAGCTACATATTGACGCGTTGGTGCTGTCGCACACCTCGTTTCCTCTGAACTTGGTG
TCTCTGGCCATTTTCCTGGCTCTCAAATGCACACGTCTTCCTCTTCTGGTGTCCTCAGCC
AATGACGAGGAGCACGAGGAGGTCCCTGTATTTTCCGACGACTGGGAGGAGTCTCTGGCG
CTCTGTGGAGGCGAGATTCTGGCCAACAACTCCGGATCGGAGGCCATTTCGTGGACCCCG
CCTCTGGTGTTTTCTCTGGCAGTGGTAGGGAACAACATTCTCGTCGATCCCACCCACGAA
GAGGAGTCTGTGTCTGACCTTGGCCTCATCATGGGCTGGTGCAACGGCCAGGTCTGCGCT
CCTCTACGAATCATCGATCTTGCATCTGCTGGAGGCAACGTGTCTCCCGAGCAGCTTAGC
CAGCAACAGAGCATGCTGGAGCAGGGCATCGACCTGAACATGAAGGGTACTTCGCGAAAG
CTCATCATGAAGGCCTACTCTCTGCTTACCAACACCGCTCCCGAGGTTGTTGCTGCGCTC
GACGCCACTGCTGACGAGGAGGATGGTGCTTTGTTCTAAGCACCTGGAAAGAAAGGATGA
GCCTTTACACATATACACAATGCTTGTGCACGACTGTATTAGATTTCATTGGTCGTGTCA
TACAAGTGACCACAGCTTTGCACATAATGTATTTTGATATTGAACAGTACGTACAGTA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D11000g_CDS-001

Protein length: 313 aa.
Product: Exosome non-catalytic core component, putative

>YALI0D11000g_CDS-001 MPFSPAEIDYLRKSLQATPTIRPDAREPNQFRPVDAAQNFLPATNGSARIRTSDGGECIV
GVKAKVVKNSSVDELIAVEVDIDDIRDDSPLPKLLSAVLQTLILSSIDTNRLRLTRSNYA
FKLHIDALVLSHTSFPLNLVSLAIFLALKCTRLPLLVSSANDEEHEEVPVFSDDWEESLA
LCGGEILANNSGSEAISWTPPLVFSLAVVGNNILVDPTHEEESVSDLGLIMGWCNGQVCA
PLRIIDLASAGGNVSPEQLSQQQSMLEQGIDLNMKGTSRKLIMKAYSLLTNTAPEVVAAL
DATADEEDGALF*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG