YALI0D09449g

Overview

Description highly similar to uniprot|P20447 Saccharomyces cerevisiae YGL078C DBP3 Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis
Locus type CDS
Locus tag YALI0D09449g

Location

Species Yarrowia lipolytica Positions 1205382..1207072
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1691 (nuc.)
Previous locus YALI0D09427g Next locus YALI0D09471g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D09449g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D09449gYALI0D09449g_mRNA-001YALI0D09449g_CDS-001

Nucleotide sequence

 

>YALI0D09449g
ATGGGCAAACGAGATCGAACTGAAGACGACGAGGTTGTCACCAAGAAGGTGAAGCTCGAC
AAGAAGGACAAGAAGGAAAAGAAGGAAAAGAAGGACAAGAAGGACAAGAAGGACAAGAAG
GACAAGAAGGATAAGAAGGATAAGAAGGAGAAGAAGGAAAAGAAGGAAAAGAAGGAAAAG
AAGGAGGAGGTCTCTGATGAGGAGGAGGTCGCTGAGGAGAAGCCCAAGATGACTTACACT
GCCTCGGCTAACACCATCAAGTCTTCTGGCGAGTACACTCAGTGTGACGATCTTACTAAC
GTTTCTCAGTCCACCATTGACAACTACTTCAAGGAGCACACCATCACCATTGAGGGTGAG
CAGATGCGACCTACGATGGAGTTTAGCCACGTGACTCTGGATCCTCGAATCACCAAGGTT
CTCACCAAGTTCCCTCGACCCACTCCCATCCAGGCTGTTTCTTGGCCCTACCTTTTGGCT
GGTAAGGATATGGTTGGTGTTGCCGAGACTGGTTCCGGTAAGACCTTCACTTTCGCCGTG
CCTGCTCTTGAGCACGTTCTTAGCACCTCTGGAGGCAAGGGCGTTCGAGTTCTTGTTGTT
TCTCCCACCCGAGAGCTGGCCATGCAGATCTACGACAACATCAAGGAGTTGTGTGATGTT
GTTGGTCTGCATGCCGTCTGTGTTTATGGCGGTGTCCCCAAGGAGCAGCAGCGAAGCGAC
CTCAAGCGAGCTTCTTTCGTCATTGCTACTCCCGGTCGTCTCTGTGATCTCATCGACGAG
GGCTCTTGTGATCTCTCCAAGGTTTCCTACCTTGTTCTTGATGAGGCTGACCGAATGCTC
GAGAAGGGTTTCGAGGAAGATATCAAGAAGATCATTGGTTCCACCCGACCCACCGGCCGA
CAGACCGTCATGTTCTCCGCCACCTGGCCCCCGGAGGTCCGGAAGCTCGCTGAGGGCTTC
ATGAAGACCCCCACCAAGGTGATGATTGGAGAACGAGACGAGCTGGCTGCCAACAAGCGA
ATCACCCAGTCTGTCGAGGTGCTTGACCCCCGAGCCAAGGAGGGCCGTCTTCTCGATCTG
CTGCGTCAGTACGCCAATGACGACTTCAAGATTCTTATTTTCGCTCTGTACAAGAAGGAG
GCCACTCGAGTGGAGAACACCCTGACTCGACGAGGCTACGGAGTCGCTGCTATTCACGGA
GATCTATCTCAGCAGCAACGAACCAAGGCTCTCGACGAGTTCAAGAAGGGCGAGAAGAAC
ATTCTGCTGGCTACTGATGTCGCTGCTCGAGGTCTGGATATCCCCAACGTCAAGCTTGTC
ATTAACCTGACCTTCCCTCTGACCGTGGAGGACTACGTTCACCGAATCGGTCGAACTGGT
CGTGCCGGAAAGACCGGACAGGCCATTACCCTGTTCACCGAGCACGAGAAGCATCTGTCT
GGTGCTCTGATCAACGTTCTGCGAGGAGCCGACCAGCCCGTTCCCGACGAGCTGCTCAAG
TTTGGCGGCCACACCAAGAAGAAGGAGCATGGTGCCTACGGAGCATTCTTCAAGGACGTG
GACATGACCAAGAAGGCCAAGAAGATCACTTTCGACTAAGCGGAGGAGGCTTCACGGATT
CACTAAGAAAAGGGATAACATTAGATTAACTAGAAAATGCATTGTATAGTACAAGTACAG
GTACAATATGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D09449g_CDS-001

Protein length: 533 aa.
Product: Third-largest subunit of DNA polymerase II, putative

>YALI0D09449g_CDS-001 MGKRDRTEDDEVVTKKVKLDKKDKKEKKEKKDKKDKKDKKDKKDKKDKKEKKEKKEKKEK
KEEVSDEEEVAEEKPKMTYTASANTIKSSGEYTQCDDLTNVSQSTIDNYFKEHTITIEGE
QMRPTMEFSHVTLDPRITKVLTKFPRPTPIQAVSWPYLLAGKDMVGVAETGSGKTFTFAV
PALEHVLSTSGGKGVRVLVVSPTRELAMQIYDNIKELCDVVGLHAVCVYGGVPKEQQRSD
LKRASFVIATPGRLCDLIDEGSCDLSKVSYLVLDEADRMLEKGFEEDIKKIIGSTRPTGR
QTVMFSATWPPEVRKLAEGFMKTPTKVMIGERDELAANKRITQSVEVLDPRAKEGRLLDL
LRQYANDDFKILIFALYKKEATRVENTLTRRGYGVAAIHGDLSQQQRTKALDEFKKGEKN
ILLATDVAARGLDIPNVKLVINLTFPLTVEDYVHRIGRTGRAGKTGQAITLFTEHEKHLS
GALINVLRGADQPVPDELLKFGGHTKKKEHGAYGAFFKDVDMTKKAKKITFD*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG