YALI0D08756g

Overview

Description weakly similar to uniprot|P14736 Saccharomyces cerevisiae YER162c RAD4 excision repair protein
Locus type CDS
Locus tag YALI0D08756g

Location

Species Yarrowia lipolytica Positions 1121300..1124009
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 2710 (nuc.)
Previous locus YALI0D08734g Next locus YALI0D08778g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D08756g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D08756gYALI0D08756g_mRNA-001YALI0D08756g_CDS-001

Nucleotide sequence

 

>YALI0D08756g
ATGGGTAAACGTACGGTCTCACAGAAGGACGTCACCGTCACGCATTTCGACATGGTCCGC
GAGTACCAGGTCACCGAAAAGAAGCGCAAAATCGAGCCGTCGGCTCCAGTGGCAAAATTG
CCATCCAGAGCCAAGCAAGAGAAGGGCAACACTAGCAGCCGACCAGCAAGCGTAGAACGG
GCCAGTTCGCAGACAACGACGTTCGATTTGGACGCCGACGAGAGTTCCGACGAGGAAGAT
TGGGAGGAGGTTGATATCGATCCGTCGGCAAGCTCAACGAATGCAGAAACTGGCATCTCA
GTTTCATTTGAGCCTGGAGCTTCAATTGCCGAAGAATCAGTCATCAGAGGAGGGTGGGAC
ACCAAGGGAACAAATGTAACGTCCAAGAAGGGCAAAGGAAAACGGACAGGACCGAAGCTG
TCACGGGAGGAACGCCAACGACGAATTCAAGTGCATCAGATCCATATCATGGCCTTACTC
AAACATGCTTCGATACGGAACGCCTGGGCCAACGACTTGCTACTTCAAATGCAGCTGCGA
GAGACGGTTCCAGCTACAAAGCTCACAGGACTCACGCCCGACAAGACACAGACAAAAATG
GTCAGAACTGCGAAATTCTACGAATCGCTCAAATACTTACTGCAACAGTGGGCCAAGATC
TGGTACACAGACTCCCGGGGACTCCACAAACGGGACTTTAACGAGTTAGATGACATCAAC
CCGGACTCGTACGACCCGCCCGTCACCAAGGCCATCTTCAACAAGAAGGTGATTCGACAT
CGAGGCTCCAGAGATCTAAAGGTGCAGGGATTTGTGGCTCTACTGAGAGCTGTAGGGGTG
CAAGCGAGATTGGTGGTCTCTCTACAACCTCTGGATTTTGCTTCCAACACAATAGTTAGC
GATCTTGCTGCTGAAAAGCAGCCTGCTGAGAAAGCTTCCCCTTCAGTTCTTCGCAAGCCC
AAGTTCAGCAGCACTTCTGGACAGTCAAAAAGTGCACAAAGAAGCCAGTCGAGAATGCAC
TACTCCGAGTCGCCTACTCCTGTATACTGGGTGGAGGTTTTTGAGCCTACAGGCCAGAAA
TGGGTCAGTTTGGACCCGGCTTGTGAAGTGAACATGGAAGTTGTGGGAAAAGCAGGAAAG
AGTCGCATTGAGCCATCGCTACAGGACAAGCTAAACACTCTGACATATGCATTAGCGTTC
AACAAAGAAGGCACCGTCACTGATGTTACAAGAAGGTACTCCTCAGCCTACAACTCCCGA
ACCAGACCTGCACGTCTAACTCGCTATTTGGCGGGCAGTATCTGGTGGAACAAGCTCATG
GGACTGTATAGACCTCCTATCACACATGCTTCCTGGGCCGAGGAAAAGTTTCTGAGAGAG
AGGGTACTTGCTGAAGGGTTTCCCAAGAACATTCAGTTATTCAAGAACCATCCTCGGTAC
GTGTTGGAGCGCCATTTGCGTCAAGATGAAGTGCTGAAGGAGAAGAATCCCTGTGGAATC
ATGTCAATGAAGACCAACTCCAAGCCTGAGAACGTATATCCTCGATCTGACGTTCAGCAG
GTCAAGTCAGCTAACAAGTGGTACCAGATTGGCCGGATCATCAAGCCTGGTCAGATCTGC
AAGAAGCGAAAGAAGATGGCAAAGTCTAGATTCCGACTGGACGAAGAAGAAGACTCTCCC
ATGTACTCGTTTGACCAGACCGAGGCCTATATTCCGCAACCTGTTGTTGATGGTCAAGTG
CCTCGAAACGGATATGGGAACGTTGACCTGTTTACTCCTTTCATGATGCCCCCTGGAGGA
GCCCATGTGCGTGGAAAAGGAGCTTATATGGCTGCCAAGTCGCTAGGAATCGATTATGCC
AACTGTGTTGTTGGCTTTGACTTCACCAAGGGTCGTCAGATCAAGCCCCGAATCGACGGT
GTGATTGTCGCTGAGAAGTACGCCAAGGATGTTGCTGACGTTTGGTCAGACATGCAAGAA
CAGACGCTCGCCAAGGAGGAACGAAATAGAGAGGTACGAGCCCTGTTGCGATGGAGACGG
TACCTGACCGCTCTTAAGATCAGACATAGACTCGATGCTGAGCATGGTGAAGTCGAACTG
GAGAGTGGCGAGGAAGAGGAGGAAGATGAAGAGGTGAGAGTGGAAGAGGTGAACGAGGAA
GTCAAGGAAAAGGAAGAAAACGGCGTCATTATTATCGATGATAATGAATCAGACGAACCT
TGGTACGTTCCACCCTCGGTACTTCAGCCTAAACTGGACCAGTATCTTAACAAGAGTGCT
TTTCGTCTCGACAAGCCATTAAATATTGTTGTCGATGAGCCTGAGGAAGAAAAAGAAGAG
GAAATACCAAGGGAGGCTTCAACGTTGGCTTCTACACCGAGTTCAACGCCCTGTTTGACT
CCTCCTCCTCGTGATTCTACTACTCCCCGAGAAAACGGCGCTGACAAGACACGTCCGTCT
CAACTCCAACGAGCAAGCTCAGTGGTAAGTGTTGGTTCTACAGATACAATTTCGAGCGAA
GAAGGCAACCCTCTGTCCGAACTTTCAAGTGTCATCAAGTCTCCTGTCAAGATTGATTAC
TCTTCGTTAGCCGTAGCAGATGATTCCGATTCTCCTGATGAGATGAGTGAATCGGAGTTG
TACAGTGAGTAACGAAGATCAAACACATAATGATATACAAGTGCTGTACATATCAAATAA
CTAAGATGTG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D08756g_CDS-001

Protein length: 884 aa.
Product: Conserved hypothetical protein

>YALI0D08756g_CDS-001 MGKRTVSQKDVTVTHFDMVREYQVTEKKRKIEPSAPVAKLPSRAKQEKGNTSSRPASVER
ASSQTTTFDLDADESSDEEDWEEVDIDPSASSTNAETGISVSFEPGASIAEESVIRGGWD
TKGTNVTSKKGKGKRTGPKLSREERQRRIQVHQIHIMALLKHASIRNAWANDLLLQMQLR
ETVPATKLTGLTPDKTQTKMVRTAKFYESLKYLLQQWAKIWYTDSRGLHKRDFNELDDIN
PDSYDPPVTKAIFNKKVIRHRGSRDLKVQGFVALLRAVGVQARLVVSLQPLDFASNTIVS
DLAAEKQPAEKASPSVLRKPKFSSTSGQSKSAQRSQSRMHYSESPTPVYWVEVFEPTGQK
WVSLDPACEVNMEVVGKAGKSRIEPSLQDKLNTLTYALAFNKEGTVTDVTRRYSSAYNSR
TRPARLTRYLAGSIWWNKLMGLYRPPITHASWAEEKFLRERVLAEGFPKNIQLFKNHPRY
VLERHLRQDEVLKEKNPCGIMSMKTNSKPENVYPRSDVQQVKSANKWYQIGRIIKPGQIC
KKRKKMAKSRFRLDEEEDSPMYSFDQTEAYIPQPVVDGQVPRNGYGNVDLFTPFMMPPGG
AHVRGKGAYMAAKSLGIDYANCVVGFDFTKGRQIKPRIDGVIVAEKYAKDVADVWSDMQE
QTLAKEERNREVRALLRWRRYLTALKIRHRLDAEHGEVELESGEEEEEDEEVRVEEVNEE
VKEKEENGVIIIDDNESDEPWYVPPSVLQPKLDQYLNKSAFRLDKPLNIVVDEPEEEKEE
EIPREASTLASTPSSTPCLTPPPRDSTTPRENGADKTRPSQLQRASSVVSVGSTDTISSE
EGNPLSELSSVIKSPVKIDYSSLAVADDSDSPDEMSESELYSE*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG