YALI0D08624g

Overview

Description similar to uniprot|Q8BHJ9 Mus musculus STEP II splicing factor SLU7 homolog
Locus type CDS
Locus tag YALI0D08624g

Location

Species Yarrowia lipolytica Positions 1107056..1108386
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 1331 (nuc.)
Previous locus YALI0D08602g Next locus YALI0D08635g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D08624g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D08624gYALI0D08624g_mRNA-001YALI0D08624g_CDS-001

Nucleotide sequence

 

>YALI0D08624g
ATGAGCAAGCCAGCTACGACTCTTGATGGACTTCAGGACGGGTCGGTGGAGCTGCAGAAA
CGGCTGTCGGCCAAAAGAGACGCCGAGGGAGAGCTCAAGCACGAGGAGGACCGCAAGCTA
CGGAAGGAGGGCAAAACCCAGACGCCTGTGACGAACCAGGAAGGAGATGTTTTGAACCCG
TATATCCCGCGATTCATGTCGTCAGCGCCGTGGTACGCTAAGGCGGGTGATGACGACCCG
TCTGCGTCTTCGTTGGACCATCTGAAGAAGGACAAGACGGACTCCAAGAAGGAGGAGTGG
TACGCTCGAGGCCAGGATCGAAGTTCCCTTGAGCGACCCAAAAAGTTCCGCAAGGGCGCG
TGTGAAAACTGCGGTGCCATGACGCACAAAAAGAAAGACTGCATGGAGCGTCCACGAAAA
GTGGGTGCGAAATACAAGGCCGACAACCTGCAGGCCGACGACGTGATATCCAACCCGCAC
ATGAGCTGGGATTCGAAACGAGATCGATGGAACGGCTACGACGCCGAAGACTTCAAGCGA
GTCATCGACGAACATAACATGACCGAAGAGCTGCAGAAGAAGCTGCATGGAGACGCCCCA
GCTGAGACCGATGCCGAGAAGGCTGCTGCTGTGGAGGAGGCTATTCGAAAGTCCACACGA
ACATTGCGACTGCGAGAAGACACGGCTGTGTATTTGAAAGATCTCAACTCGGAGACCGTC
TACAATCCGGGCAGTCGGACGTTTCGAACTGCTGATGAGGGTTACATTGACAAGGACGGA
ATGTTTGTGAGACACACGACTGGTGAAGGAAAAGAGATGGAGGAGCTTACTCGTATTGCC
GAGGCTGAATCGGCGCTGGGAAACCAGATCCATTTGCATGCCAACCCCACGGCCGCCGCT
ATTGCGGCCAAGCGGATCAAGGAGGAGGCCGAGAAAGCCAAGGACGCCGAAAAACGGGCG
CTCGAGGAAAAGTATGGCAAACAAGACCATGTTCGAGTACGACCCAAAGAATACACTTCT
GTGGTGACGGCAAAGAAGCCCACAGTGATCCGTGCCAAGAACGCTCAGGGTATTGCTGTT
TCCAAGTATGAGGAGGATGTGTTTCCAGGCAATCACACTTCTGTTTGGGGAAGCTACTAT
GATAAGGAGACTGCCAAATGGGGTTATGCTTGCTGTCATTGTCTGATCAAGAACGGCTAC
TGTGTTGGAGAGAAGGGCAAGAAGAAGAAGGGGGCTATGGATACTGTCTGAGGGACAGAT
TCACTTGTAAATCCTGGACTTCTTTCGATACTTCTGTGTAAATTATTAATTTATTGCATC
ACCTGGAAGGG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D08624g_CDS-001

Protein length: 417 aa.
Product: STEP II splicing factor, putative

>YALI0D08624g_CDS-001 MSKPATTLDGLQDGSVELQKRLSAKRDAEGELKHEEDRKLRKEGKTQTPVTNQEGDVLNP
YIPRFMSSAPWYAKAGDDDPSASSLDHLKKDKTDSKKEEWYARGQDRSSLERPKKFRKGA
CENCGAMTHKKKDCMERPRKVGAKYKADNLQADDVISNPHMSWDSKRDRWNGYDAEDFKR
VIDEHNMTEELQKKLHGDAPAETDAEKAAAVEEAIRKSTRTLRLREDTAVYLKDLNSETV
YNPGSRTFRTADEGYIDKDGMFVRHTTGEGKEMEELTRIAEAESALGNQIHLHANPTAAA
IAAKRIKEEAEKAKDAEKRALEEKYGKQDHVRVRPKEYTSVVTAKKPTVIRAKNAQGIAV
SKYEEDVFPGNHTSVWGSYYDKETAKWGYACCHCLIKNGYCVGEKGKKKKGAMDTV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG