YALI0D05511g

Overview

Description similar to uniprot|P38792 Saccharomyces cerevisiae YHR069c RRP4 3 -5 exoribonuclease required for 3 end formation of 5.8S rRNA (Exosome complex)
Locus type CDS
Locus tag YALI0D05511g

Location

Species Yarrowia lipolytica Positions 712187..713339
Strain CLIB 122 Strand Sense
Chromosome YALI0D Total length 1153 (nuc.)
Previous locus YALI0D05489g Next locus YALI0D05533g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D05511g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D05511gYALI0D05511g_mRNA-001YALI0D05511g_CDS-001

Nucleotide sequence

 

>YALI0D05511g
ATGGCCATCTTGACGATTCAAAAGGCGACTCCCCGAGAGGAGGAAGACGTGGAAATGGTG
TATTCGGACGCCGACTCGGACGCCGAGGAGCAGATGGTCATGTCTGACGACGAAAACGAA
GATATGGACGACAATGCTCAGGCAGCAAACGTGGCTGCGGGTCTGGTGACGCCCGGCAAG
CTGATTACAGAGGACCCCATTTGGATGCGAGGCCACGGTACCTACTCGGTGGGCAACAAG
ACCTTCTCATCCACTGCTGGAGTGGTGACCAAGACCAACAAGCTGCTGAGTGTGGTACCG
CTGCGAGGCCGATACCAACCCCAGATCGGAGACCACGTGGTGGGACGGATTGTGGACGTG
GGAGTGAAGCGATGGCGGGTCGACATTGGCGCCAAGCAGCTGGCTGTGCTTCAGCTGGGC
TCCGTTAACCTGCCCGGAGGTATTTTGCGTCGAAAGCAGGAGTCCGACGAGCTGCAGATG
CGAGGATTCCTCAAGGAAGGAGATCTCATCAACACAGAGGTTCAGTCGCTGTACCAGGAC
GGATCTGCTGCTCTGCATACCCGTTCGTTGCGGTACGGTAAACTGCGTAACGGAGTTCTC
ATCACTGTGCCCAGCGCTCTGATTGTGCGTGCAAAGAGCCATGTTCACCAACTGCCTGGC
GGAGTGGACACTGTGGTGGGAGTCAATGGCTGGATCTGGCTATGTATGGCCTGGGCCAAT
TCTCACCTGACTCGAGAGAACACCACAAGTATCACTCGACTGGAAGAAGAGGCCTCTTTG
ACTGAGACATACAGTGACAAGAACGAGGACATTCCCCGGTCTGTCAGAGAGAACATTGCG
CGGTACGCCAACTGTTTCAAGGCTCTGGCTGCTAATGAGGTTGGTATCACCGAAGATCGA
GTCATTGCTGCCTACGAAGCCAGTTTGGTGTACCCTAGTGCTGGAGACTTGATTGATAAG
GAGGCAAAGGAGATTATTGCTGCCAAGGCTATTGCTGCGTGAACATAATGCCTTTGAAGG
TACAGCCTGAGTGTTGGGTGTGAAGCGGAGACTCATCTAGGGAGTAGCACTGGCTGTGGC
TCTGCATGCAAGACTGGACACGGGCCAGATATAAATGTATTTATAACAGATGAAGATTAG
CATTGTATGTTTT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0D05511g_CDS-001

Protein length: 334 aa.
Product: Exosome non-catalytic core component, putative

>YALI0D05511g_CDS-001 MAILTIQKATPREEEDVEMVYSDADSDAEEQMVMSDDENEDMDDNAQAANVAAGLVTPGK
LITEDPIWMRGHGTYSVGNKTFSSTAGVVTKTNKLLSVVPLRGRYQPQIGDHVVGRIVDV
GVKRWRVDIGAKQLAVLQLGSVNLPGGILRRKQESDELQMRGFLKEGDLINTEVQSLYQD
GSAALHTRSLRYGKLRNGVLITVPSALIVRAKSHVHQLPGGVDTVVGVNGWIWLCMAWAN
SHLTRENTTSITRLEEEASLTETYSDKNEDIPRSVRENIARYANCFKALAANEVGITEDR
VIAAYEASLVYPSAGDLIDKEAKEIIAAKAIAA*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG