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  6. YALI0D05041g

YALI0D05041g

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Overview

Description weakly similar to uniprot|A3LN49 Scheffersomyces stipitis C2H2 zinc finger protein
Locus type CDS
Locus tag YALI0D05041g

Location

Species Yarrowia lipolytica Positions 646148..649440
Strain CLIB 122 Strand Antisense
Chromosome YALI0D Total length 3293 (nuc.)
Previous locus YALI0D05005g Next locus YALI0D05049g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0D05041g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0D05041gYALI0D05041g_mRNA-001YALI0D05041g_CDS-001

Nucleotide sequence

 

>YALI0D05041g
ATGTCCGACGACCGGAAATTCAAATGCAAGCACCCGGGGTGCGAAAAGACCTTCAACAGA
CGGGATTATCTCATACGACACAGTGCTAACCGTGAGTGGCGACTTGGCAAGTGGTAGAGG
ATGGAGGCAAGAGGCAAGAGGCAAGAGGCAAGAGGCAAGACACTTACTAACCCAGACCTC
GACACGCTGCCTTTTCAATGTCCGCAGTGTCCCATGAAGTTTGCCCGAGCAGACTTGCTG
CAAAAGTGAGTACACAACGCACGCTGAGTATCAAATGCGAGGTGTTGGTGGGGACAAGTG
GAGACCGCAACACTGAGCGTTTAATGCCATGTGCAGAGAGCATATTACTCTAGGATGGAA
GAGAATGAGGAGATACAGCGCGAGATATCAGCTCAAAAATACCACCCCAGCCGAAAGGTA
CCTGTTATCTTTTGGTGCTTTCTTGCGTGTCGGGGTACATACTGCTTACTGGAGGCGGCT
CATGTTGGTCCTGGCCTGCTTCTAGAGTGGTTCTACTGCTTTAACGCTTTTAGCCCGGTT
TCAGGCAGGGGACTAGGCCAGCAGCACACGGGCTTAGGCACACGTAGCAGATGCCGAGCA
AAGCAGCACAAAAGTGCAGACAGTTCTAAGAGTCGCTTAGCCTGGAGCTTCTTCTAGGTG
GTGCAGCGTACTACCTTCTCATTTGTCTGGGCTTTCGCATCCATCAGGTCCATTTATGAT
CAACAGTTCTGTACTAACACAGGCACCTCAACACGCGCTCGCACGAACGACGAAAGAAGC
GAGAGGAGAAAGAAAAAGCGAAAATCGAGCGTAAACAACGACGCAACTCCATGAAGTCCC
AGAGCAGGAGCAACTCGATCGACATGAACACCAACATTGTGTCGCCCACCACCGACAATT
ACACATGGCTGTTTGGCGCCCAGTGGCCCGAGTCCGCCACCACAGCCGAAGACACGTTCA
AAATCAAGAGCGAGTTTGTCCCACATCAGGAGCCGACGCAGCCCGACAAGAACACCAGCG
AGCTGGACTTCATGCACATGGTGGAGTTTGAACAGCAGGGCCAGGGTCGTGCCTTTTATG
CCGGCATCAAGACCGACCTCGACAACTCAGACACAACCAGTGACTGCTCTATCATGTCAC
AGTACTCCAACTCCACCCAGGGCACCTATCCTCGCTCCTCGGTCAACATGCCCGACCTGA
CGCTGCCTCCCCATATGCGAATGTCTGTGGCCTCCGTCACTTCAGCTCCCTCCATGCCCC
ACGTGCCACACATGCTCCAGCATCAACCCCAGCACCGCGCGGAGCTGCAACCGCCACACA
CACATCTGATTCAGCAGCAACCGCCGCCACCACCCCAGCATGTCCATGGCGTTTCTCCAG
AGATACTTAATCCATCACTGGGAATCCAGCCTGTGTGTCTCAACACCATCGGCGACCTGA
CACCTCCCGCCGAGCCTTTTGTGGCCCGAGAAGACAAACTGGCCCAACAGTCAGCAAATG
CAAACCAGCAACATCTCCCCACGCCGCAGACCCACACACAGAGCCAGACACAACCGACGC
AGCCTTTGTCGCCCCGTGACAAGTACCTGGGGCTTTTCTGGAGCAACTTTGACCAGCTGT
ACCCCATCATCCACAGACCGTCATTCAACCCGGACACGGCTCCCGAGGCGCTCGTGACTA
CCATGGTGTGTGTCGGAATGACCTACGACTCCGAGCCTGCAGTCTACCAGGAGGCTATCC
GCACCATGCAGCAGCACGTGCATCAGCTGTACTCCAAGGCTGCTTTGGTACGGGGCACCA
ATGCAGATGAAAACTTGTGGGTGCTTCAGGCCTTGGCCCTGGCTGCCTACTTCCACCGGC
TTCTGGGCTCCAAGGACCAGTGGGAGCTCGCCGAAATGTACTCTTGCATTGCTCTGGTTA
AGGACCAGATGGTGACCGAGAACGCTCCTCAGCTGGGCCCCGACATTGCTGCGTTTTGGC
AGGTGTGGATCAAGCACGAGGCTCGAAAACGGCTGCTGTGCTTCTTCTTCATCCTTGACA
CCCAAGCCGCAATTCTCTTCAAACACACCTCTCACCTGTCTGTGTTTGATACGGATCTGG
AGCTTCCCTGCACTGATGCTGCCTGGAGTGCCAGAGACACTCGGGAGTTTTACATTGTGT
ACACTCTCCAGCCCCGAGGTCCTAACAACCTGCGACCTGCTCCTGACGTGACCGAGACGC
AGTCTTACCCCAAGAACAAGCCGTCGTCTGCTTCTCGGCGATTCGACAACGAGTGTCATC
GTGACTGGCCCTCTCTCCTGTTTTGTGTCAAGCGAATCATGAGTGACTACGAGGAGGACC
AGCAGGAGTACCCTCTGGCCTGTTTCTCGCAATTTTCGCGTCTGCTGCTGCTCCATGGCA
TCCTCAACATCTGTCTGGATCTCCAGCACCGAATGGTGTCAAAGAAGACGGATTACAAGA
CCAAAATGGTTGTTGCGTTTATGTCTTGGAGAGGCTACTTTGACCGGCAGCTTCGGGAAA
TCAACCGGGAATTCCAGTTGACCAACATCATGGCTGAGAACGCAGCTCATCTCAAGGACG
AGACCAACGCCAGTGCTCTTCTTGGCAACATGTCTGGCAATGAGGACATTACTCTGCAGT
TCAACAACTACGGTAACACTCCTCTGCTGTGTTCCAACTGGTCGCTGTTCTCCGTGGGTC
TTATGACTCTGTTTGTGGACACCCAGATGCTTCGCCAGTACACTGGCACCGTTTCTTCTC
CCTCCGAACGGGTCACTGCCACTCTCCGGCAGTGGGCCAACGGCCATGACGTGACTTGGG
CTGTCTGGTACGCCAACCAGCTTCTTGGCCGGGTGTTCCAGAACGAGGCTCTGCCGTTTT
TGGCGGACCACGTGGCCTGGGGCATGTTTTCCGCCTGTCTGACGCTCTACACTTTTGAGT
CGCTACGACGGTCCAACTCGCCCCTCCAGTCGCCCCTGGAGTCGATTTCCGAGTCTCCCC
GGGTTGAGAACACCCAGAGCGAGGCTCTGGAGTACATTCGGCTGGCCTCGCAGACTCCTC
CCGAAGCCATTGACGACTTTATTTCCGAGTCGGCTGCCACGACTCTCATGCGCCAGAAAT
ACATTGTTTCTGTGCTTCGTCACACCGCCAATCTTCTGTCTTCATCGAGCAGAGAGCAGT
GTGTCTACATTGTCTCACATCTTAATGGCATTCTTGCCCGTGTATAATAGCAGCGGTGGA
TGGACTAACAACACTACACTGTCCGCTTTGCAAATATATTTATTTATAGATTT

Legend

Locus sequence
Up/downstream sequence

Edit sequence

Translation(s)

YALI0D05041g_CDS-001

Protein length: 882 aa.
Product: Conserved hypothetical protein

>YALI0D05041g_CDS-001 MSDDRKFKCKHPGCEKTFNRRDYLIRHSANHLDTLPFQCPQCPMKFARADLLQKHLNTRS
HERRKKREEKEKAKIERKQRRNSMKSQSRSNSIDMNTNIVSPTTDNYTWLFGAQWPESAT
TAEDTFKIKSEFVPHQEPTQPDKNTSELDFMHMVEFEQQGQGRAFYAGIKTDLDNSDTTS
DCSIMSQYSNSTQGTYPRSSVNMPDLTLPPHMRMSVASVTSAPSMPHVPHMLQHQPQHRA
ELQPPHTHLIQQQPPPPPQHVHGVSPEILNPSLGIQPVCLNTIGDLTPPAEPFVAREDKL
AQQSANANQQHLPTPQTHTQSQTQPTQPLSPRDKYLGLFWSNFDQLYPIIHRPSFNPDTA
PEALVTTMVCVGMTYDSEPAVYQEAIRTMQQHVHQLYSKAALVRGTNADENLWVLQALAL
AAYFHRLLGSKDQWELAEMYSCIALVKDQMVTENAPQLGPDIAAFWQVWIKHEARKRLLC
FFFILDTQAAILFKHTSHLSVFDTDLELPCTDAAWSARDTREFYIVYTLQPRGPNNLRPA
PDVTETQSYPKNKPSSASRRFDNECHRDWPSLLFCVKRIMSDYEEDQQEYPLACFSQFSR
LLLLHGILNICLDLQHRMVSKKTDYKTKMVVAFMSWRGYFDRQLREINREFQLTNIMAEN
AAHLKDETNASALLGNMSGNEDITLQFNNYGNTPLLCSNWSLFSVGLMTLFVDTQMLRQY
TGTVSSPSERVTATLRQWANGHDVTWAVWYANQLLGRVFQNEALPFLADHVAWGMFSACL
TLYTFESLRRSNSPLQSPLESISESPRVENTQSEALEYIRLASQTPPEAIDDFISESAAT
TLMRQKYIVSVLRHTANLLSSSSREQCVYIVSHLNGILARV*

Neighborhood

Browse the locus neighborhood with JBrowse:

References

There are no reference.

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ATG