YALI0C07040g

Overview

Description weakly similar to uniprot|P32588 Saccharomyces cerevisiae YNL016w Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 (ARS consensus binding protein ACBP-60) (Poly(U)-binding protein)
Locus type CDS
Locus tag YALI0C07040g

Location

Species Yarrowia lipolytica Positions 942074..944077
Strain CLIB 122 Strand Sense
Chromosome YALI0C Total length 2004 (nuc.)
Previous locus YALI0C07018g Next locus YALI0C07062g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C07040g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C07040gYALI0C07040g_mRNA-001YALI0C07040g_CDS-001

Nucleotide sequence

 

>YALI0C07040g
ATGGGCGACTCCGACCAGCATGAACACGGTCACGTGAGCCCCGAACTCGCCACAGCACAC
TCTCCACCTTTAACATCGGCTTTGCAACCAACCTCGTCCACAAGTTCAATTGAGGAAGGT
CCAGCAGCAGCATCCAACGAGGAAAAGACAGAGTCCGACAAAAGGGCACCTCTGAATGTG
CCTCCAGTCGCAGACACGCCTCCGCAGACATCTCCTGAGACGACACACAACAAGTGTCCC
CCTCCTCCAGCTTCTCAGACTCCGCCCAAGTCTCCTCCTAAGGACGATACCAGTGATGTG
AAGGGCACAGACAGTGCAAGCGGTGCAAATGGAGATACAGACGACAACACAGAAAATACC
AACAACACCAACAATACCACCAATACCACCAATACAAACCATACCAACCATACCAACACC
AATACCAATGACAAGACGGATGTGACCAGTGGGAATGCACACGAAATTCCCTCTAACACG
AGTGGCAAGACGTCACCGGCGGCAAACACCCCAACGACAACAACAACTCCTACAGCGACA
AACCCCATCCATATTCCGGGACTCACCAACACCAAGCCCGTATCGCTGTCGGGCACATCG
TCCCCCGTGGCTCACAACACGTACACAGCGGCCAGCACGGTCAACATGGGAAAATCTGGC
CACGCTAGCGACGCGGGCAGTGCGCAAGAGACAGGCTCCACGTCGGGAGCAACCACAGGA
TCAGTCGCTATAGCCACGTGTGGCGGCCGGGAAATCAACCCGCACGTGCTCTACGTGGCG
GGAGTGGACGCCTCCGTGAAGGAGTCCATTCTGCTAGACCTGTTCAAGGTTACAGGACCT
ATCAAGTCCATCAAAATCTTCCCCGACCGACAGAAGGCTAACATCAACTTTGCCTTTATC
GAGTACGAGGACAAGGAGGCTGCACAGCTGGCGATGCAGACGCTCAACAACCGCCAGATC
CACGGTCAGGAGATTTCCGTCTCGTTCGCATTCCAGACCAAGGTCGAGCGTGACTATAAC
TTGTTTGTGGGCGACCTGGGCGCCGACGTCAACGACGAAATGCTGCACAAGCACTTTGCG
CACATTCCGGGGCTGTTGGATGCACGAGTCATGTGGGACATGACGACGGGTCGGTCCCGA
GGCTACGGCTTTGTTTCGTTTGAGACCAAACAGGGCGCGGAGCGGGGTTTGATTGAAAAC
GGCAGTGTGCTCGGCAGCCGGGTGATCCGTGCTAACTGGGCCAGCTCGAGACGCAGCAAC
ATGCAGGGTCAGTCGGGACCCCAGGGAGGACGAAACATGGGAGGGCACATGGGAGGACAT
ATGGGTGGCGGCATGGGAGGTGGAATGGGTGGCATGGGCGGCATGGGAGGCATGGGAGGC
ATGGGTGGAATGGGAGGAATGGGCGGCATGGGTGGATTCAATAATGGCATGGGCAACTTT
GGACCTTATGGCAACCAAGGGATGGGAGGCCACAACCACGGACCTGGCAACCACAACATG
ATGAACAATCGAAACTACCGTGACCGAAGTGACCGAAGTGACCGAAGTGACCGAAGTGAC
CGCAACGACCGTGACCGTGGCGGTGACAAGATGGGTCTACCGAAAACGGTGTACATTGGT
AATTTGCCAAACATGCATCCGTCGGAGCTGATTCCTCTTCTGCAGAACTTTGGCTACGTG
GTGGAGTTCAAGCATCATTCCAATTACGCTTTTGTAAGCTACGATTCACATAAAAGAGCG
CAGATAGCCATGATGCAGCTCAATGGGTATAATATCCACGGACGAACGCTGAAGTGTGGA
TGGGGTAGAGACAGGAGGTAGTCCGAAGAGTGAGAGAGAGAGAGAGAGAGTGTGTGTGTG
AAAGAGAGAGAGAGAGAGAGAGTACCCCAGGCTGACATTCATCTTGCGTGTTCTGCGTAA
AAAAAACCCCCTCTTTCTCTGGATTTATGCCATAATCTCAAAAACTAGAACGATATCTAT
AACAATGTATTTATTTTCACGACA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C07040g_CDS-001

Protein length: 607 aa.
Product: Conserved hypothetical protein

>YALI0C07040g_CDS-001 MGDSDQHEHGHVSPELATAHSPPLTSALQPTSSTSSIEEGPAAASNEEKTESDKRAPLNV
PPVADTPPQTSPETTHNKCPPPPASQTPPKSPPKDDTSDVKGTDSASGANGDTDDNTENT
NNTNNTTNTTNTNHTNHTNTNTNDKTDVTSGNAHEIPSNTSGKTSPAANTPTTTTTPTAT
NPIHIPGLTNTKPVSLSGTSSPVAHNTYTAASTVNMGKSGHASDAGSAQETGSTSGATTG
SVAIATCGGREINPHVLYVAGVDASVKESILLDLFKVTGPIKSIKIFPDRQKANINFAFI
EYEDKEAAQLAMQTLNNRQIHGQEISVSFAFQTKVERDYNLFVGDLGADVNDEMLHKHFA
HIPGLLDARVMWDMTTGRSRGYGFVSFETKQGAERGLIENGSVLGSRVIRANWASSRRSN
MQGQSGPQGGRNMGGHMGGHMGGGMGGGMGGMGGMGGMGGMGGMGGMGGMGGFNNGMGNF
GPYGNQGMGGHNHGPGNHNMMNNRNYRDRSDRSDRSDRSDRNDRDRGGDKMGLPKTVYIG
NLPNMHPSELIPLLQNFGYVVEFKHHSNYAFVSYDSHKRAQIAMMQLNGYNIHGRTLKCG
WGRDRR*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG