YALI0C06842g

Overview

Description similar to uniprot|P11746 Saccharomyces cerevisiae YMR043W MCM1 Transcription factor involved in cell-type- specific transcription and pheromone response
Locus type CDS
Locus tag YALI0C06842g

Location

Species Yarrowia lipolytica Positions 913028..914639
Strain CLIB 122 Strand Antisense
Chromosome YALI0C Total length 1612 (nuc.)
Previous locus YALI0C06820g Next locus YALI0C06853g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C06842g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C06842gYALI0C06842g_mRNA-001YALI0C06842g_CDS-001

Nucleotide sequence

 

>YALI0C06842g
ATGTGAGTATCAACATGACGAAGCCCAAGCGCCCCAACACGCCCCACAACACTGCCGGGG
ACTCCGCCCACCACCCCTCCCTAGATACTGCCGCTGCGTGATTTTCCCTCGCCCCTCTCG
CCACCATTGCCACCACACGAGACGGACCCAAAAGTCGTTGGACCACCGCAAGACTCGGAG
CCGCGGACACACACAAGATGGGTCGGGTCCACGGACACGAACACACATTGACACGTGCTG
ACCAAACCATTGATTGTGATGACTGATGCTGGTGTTGTTGTCGATGAATGAAAAACGTGT
CCGACAAATGTCCGGTGTGTTTGCTGCCTGTGTTATGGGTGCGTGTTGCATGGACGGTAT
AGGGGTGCTTTGTGGTGGCTAGCATGGTACAGTCGACTCGGCAGATATTGGCCCGAATTC
TGCCATGCTACCGTTGCCACCAATTCCACTGCTGCCATTATCACCTTCTTACCCTTGCTT
TTGGGGTGTTGGTAAGGCGTTTGTCCCCGGCTAAGGCAGTAGTGGCGTGGTGCTGTGCAT
GGAGCACATGACCCACCCACACGTCCCAACAAGACACCTACTAACTCAGGTCTGACGAAG
GACTAGCTGATCCCTCTCTCGGAGACTCTCTCCAGCAATCCGACAACGTTCTCAAGCGAG
AATCTTCCCAGGGCGGACCTGGTGACGTTGGGTCTGACGATGATGATGCCGGCGGAAAGC
TCGGCCGAGAGCGACGAAAGATTGAAATCAAGTTCATCCAGGACAAGTCGCGACGACACA
TTACCTTTTCCAAGCGAAAGGCCGGAATTATGAAGAAGGCATACGAACTGTCTGTGCTCA
CCGGCACCCAGGTTCTGCTGCTGGTCGTGTCTGAGACCGGACTTGTGTACACCTTCACTA
CCCCCAAGCTGCAGCCCCTTGTCACAAAGCCCGAGGGCAAGAACCTGATCCAGGCCTGCC
TTAACGCGTCGGATGACGTTCCTGTGGCTGCCGCTGAAAGCCAAGATGCCCGACAGCAGC
AGCAACAACACCAGCAGCGTCATGGTAGCCACGTCAACAGCCAAGCCAACGGTCCCGGCG
GATCGCAGGTGGCGGGTGGCGAGCTTCCTGACCAGCTGGTTGAAGACCAGCTCGGAGGCC
ATCCCGGTCTGGCTCGAGGCCCCCCTCCTAACATGGGGGGCATGCAGCCCGGAATGAACT
ACAACATGAACCAGGACTCTGCGGCACAGGCCTACCAGCATTACCTGTCGATGCCCCAGC
AGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCGATACATGGCTGCTCAGCCCGGGCACA
TGCCCCACCAGGCTCACCAGTAAGAGTCCTGTCGTTGCATATTGTTGATTTGGGGAGTGA
AGAGTCTTTTACCGTGGACCTGTCGTTCTCCTACGCTCCCGCCTACCCTAGAGCATTGTT
AGGTTGGATCAAAACGACATACACACATGAGGTGTCACACACATTTCATGCCATTCTTCA
ACACGCTCCTCACACACACACACATCAAGGGAGATTGTACGGTTTTTATTTATGAGTAAC
TAACACAAAAGTTAGGTGAATAGTTATAATGATATGGAGTTGTTTGTATTAT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C06842g_CDS-001

Protein length: 252 aa.
Product: Transcription factor, putative

>YALI0C06842g_CDS-001 MSDEGLADPSLGDSLQQSDNVLKRESSQGGPGDVGSDDDDAGGKLGRERRKIEIKFIQDK
SRRHITFSKRKAGIMKKAYELSVLTGTQVLLLVVSETGLVYTFTTPKLQPLVTKPEGKNL
IQACLNASDDVPVAAAESQDARQQQQQHQQRHGSHVNSQANGPGGSQVAGGELPDQLVED
QLGGHPGLARGPPPNMGGMQPGMNYNMNQDSAAQAYQHYLSMPQQQQQQQQQQQQRYMAA
QPGHMPHQAHQ*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG