YALI0C05368g

Overview

Description similar to uniprot|Q9P7C7 Schizosaccharomyces pombe DEAD/DEAH box RNA helicase
Locus type CDS
Locus tag YALI0C05368g

Location

Species Yarrowia lipolytica Positions 689266..692293
Strain CLIB 122 Strand Antisense
Chromosome YALI0C Total length 3028 (nuc.)
Previous locus YALI0C05357r Next locus YALI0C05390g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C05368g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C05368gYALI0C05368g_mRNA-001YALI0C05368g_CDS-001

Nucleotide sequence

 

>YALI0C05368g
ATGCCACGTGACCGTGAGTATGACCAATGGGGCTATTCTGGCACCCGCAGAGATGGAGGT
GGACGGTACGGATACCGAGATCGCTCGAGAGACGAGCGAGATCGGTTCCGGGATGTTAGA
GACAGAGACAGAGACAGAGACAGAGACAGAGAAAGAGACAGAGGGGGTTACAGACAGGAC
CCGCGCGACCGACGTTATTCGAGATCACGTGAGCGGGAACGTCGCGGCTCTGGTTCACGG
GATCGGTCACGGGATCGGTCACGGGATCGGTCACGGGACGCACATCGACCTCCCCCCTCG
GGCCGTCCACACCAGCCTTCTGGGCATGATTCTACTAAGTCATCTAATTCCATGAGTGAA
ACTTCGAGTACTAGCCAGGTGACCGGCACCACGCCCAATACGACAAATGCAACCCCGTCG
CAAGCAGAAATCGACGCCAAAAAAGCTGCCAAGCTTGCCAAAGTCGCTGAATGGAAGCGC
AAAAAGGAGCTGGAGAGAAGTAAGAGCGCCAGCGCGAGCCCTGCTCCTTCCACCGCCCCC
GCTTCTCCGAAAGCCGGCTTCTCCATGTCCGGATTGAGTGGTTTGCGTAAAGCTACAGAT
CAGGGCCAGGTGAAGAGAAAGATGTTCTTTGGGGGAGACTCAGATGAAGAGGACGCCGGT
AGGAAGCCGGCAAAATTGTTGAAAAAGTTGGGTGAGAAGGAGGGCAGTGGTAAGAGTGAG
GGTAAGGGAAGAGGTGGAAGCCAAAGTGAGGCCAAGAATGCCTCTGAAAAGAACGGTGCT
GCTTCTGAGCCTGCCGAAGTCGACCCCCTCGACGCCTACATGTCTTCCCTGACCCTTCCA
ACCACCACATCTGTCTCCATAGCCGACTCCACTCCTTTGGAAAATCTCAATGTCTGGGAG
CAGGTGGATACGCTGGAAAAGTCACAGGATCCGACTCTCGATCTTTCTGCGCTTTCGAAA
CGAAAGGAGATTGCGATTGTGGACCACTCCAAACAGGTCTATGAAGACTTCCGACGCCAA
TTCTACGTCGAATCGAGCGAACTTGCCGACATGACTGAAGCCGAAACGAATGAGCTGCGT
CTTTCACTCGACGGAATCAAAATCCGAGGCAAAGATTGTCCCAAGCCAATCTCCAAATGG
ACACAACTGGGTCTTCCGGGACCTACTATGGGAGTTCTGAACGACTTGCGATACGATAAA
CCCACAAGTATCCAAGCCCAGGCAATTCCAGCTGTCATGAGCGGCCGAGATGTGATTTCT
GTAGCCAAAACAGGTTCAGGAAAGACCTTAGCGTTTCTATTACCAATGCTACGTCACATC
AAACACCGTGTTGGGGTCGAAACACATACCACCACTCTTTCGGGGGCCTCCTCTCACCCC
TTGGGTGTCATCATTACACCCACAAGAGAACTGTGTGTACAAATCTACCGAGACTTGAGG
CCGTTTCTGGCTGCTCTCGAACTCACAGCTGTATGCGCTTATGGCGGCAGTCCCATCAAA
GACCAGATTGCTGCTCTCAAAAAGGGCACCCATATCATTGTCTGTACTCCTGGACGAATG
ATCGACTTGTTGGCTGCCAACCAAGGTAGAGTGCTCTCATTATCCAGAGTGACCTTCCTG
GTCATTGACGAAGCCGATCGAATGTTCGATATGGGCTTTGAGCCTCAGGTTCTCAAGTTG
ACCCAATCTATCCGACCTGACCGGCAAACTGTACTTTTTTCAGCCACTTTTCCGAAGAAA
ATGGAACAGCTGGCGCGAAGAGTGCTCAGCAAGCGGTCGTCTGACTCCCTGGGTCCTATT
GAAATCATTGTCGGAGCGCGCTCCGTGGTTGCTTCTGAAATCACGCAGTTTGTGGAAGTA
TTCCAGAACGAAAAGAGCAAGTTCCCGCGCCTTTTAGAGGTTCTGGGCAAGTATTTTGCT
CAGGGATTCTTTGACGAGCAAAGTGAGGGTCGTGTGGGTACCGGAGAGTCGGCAGCTACC
CCCATTCCCAACCCCAAGTGTCTCATCTTTGTGGAGCGTCAGGAGAGTGCTGATTCTTTG
CTCAAGGAGCTCATCCAATCTGGTTACCCGTGTCTTTCTATTCATGGAGGCAAGGAGCAG
GCTGATCGAGACCAGGCGATCAGCGATTTCAAAAGCGGGCTTGTTTCCGTGCTCATTGCC
ACCTCTGTGGCTGCTCGAGGTCTCGACGTCAAGGGGCTCGGTCTAGTTGTCAACTGGGAC
TCCCCCAACCACATGGAAGACTACGTGCATCGGGTTGGGCGAACCGGACGGGCTGGTCAG
AAGGGTACAGCGTTGACGTTCCTTCTGAGTGACCAGGAGCGTCTGGCAGCTGAAATCTCA
CGTGCCATCAAGTCGTCTGGAAACGCGCCCCCTGCGCCTGTGCAGCTCATGACCGAGAGA
TTCGAGTTCAAGGTGCGGTCTGGAACTGAGAAGAGACACATGTACGGCTTCTCTGGTAAA
GGTCTGGAGCGTCTACAGGATGAGAGAGATGCGACCAGAGAACATGAGCGACGAGCATAT
GAGGGAGACGAGGCTGGAGAGGCTGAGACGGAAAGCAGTACTCCAGCTGCCAGTACTGCA
AACACTGATATCATTCCCAAGCCTGTGATTGTGGTTACTCCTCCAGACAGCAAATCCCCC
ACAACTGCTTACCACACGACGCTGCAGATCAACGACTTCCCTCAGCAGGCTCGATACAGA
GCCAGTAGTAACACTTCTGTCAGTCGTGTTATTGCCAACACTGGTTGCAGTATCACTGCT
AAGGGCGAGTACTATCCTCCTGGTCGTATTCCCGGACCCAAGGATGAACCCAAGCTGTTT
ATTCTCATTGAGGGTACCAGTGAGCGGGCGGTGAAACTGGCTCATCATGAGTTGTCGGAG
CTTCTGGTGAGTGGTTTGGTTAAGGGCGCTAGGTATCAGGTGTAGACGATACCAAGGGGG
GGTCAAACTTTGTAGGACCGAGTATGGAATGGTCCATGTACGAGTAGGAAGATGTATATA
TTATAACGATTGACGAATGAAGCGGTTG

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C05368g_CDS-001

Protein length: 975 aa.
Product: DEAD/DEAH box RNA helicase, putative

>YALI0C05368g_CDS-001 MPRDREYDQWGYSGTRRDGGGRYGYRDRSRDERDRFRDVRDRDRDRDRDRERDRGGYRQD
PRDRRYSRSRERERRGSGSRDRSRDRSRDRSRDAHRPPPSGRPHQPSGHDSTKSSNSMSE
TSSTSQVTGTTPNTTNATPSQAEIDAKKAAKLAKVAEWKRKKELERSKSASASPAPSTAP
ASPKAGFSMSGLSGLRKATDQGQVKRKMFFGGDSDEEDAGRKPAKLLKKLGEKEGSGKSE
GKGRGGSQSEAKNASEKNGAASEPAEVDPLDAYMSSLTLPTTTSVSIADSTPLENLNVWE
QVDTLEKSQDPTLDLSALSKRKEIAIVDHSKQVYEDFRRQFYVESSELADMTEAETNELR
LSLDGIKIRGKDCPKPISKWTQLGLPGPTMGVLNDLRYDKPTSIQAQAIPAVMSGRDVIS
VAKTGSGKTLAFLLPMLRHIKHRVGVETHTTTLSGASSHPLGVIITPTRELCVQIYRDLR
PFLAALELTAVCAYGGSPIKDQIAALKKGTHIIVCTPGRMIDLLAANQGRVLSLSRVTFL
VIDEADRMFDMGFEPQVLKLTQSIRPDRQTVLFSATFPKKMEQLARRVLSKRSSDSLGPI
EIIVGARSVVASEITQFVEVFQNEKSKFPRLLEVLGKYFAQGFFDEQSEGRVGTGESAAT
PIPNPKCLIFVERQESADSLLKELIQSGYPCLSIHGGKEQADRDQAISDFKSGLVSVLIA
TSVAARGLDVKGLGLVVNWDSPNHMEDYVHRVGRTGRAGQKGTALTFLLSDQERLAAEIS
RAIKSSGNAPPAPVQLMTERFEFKVRSGTEKRHMYGFSGKGLERLQDERDATREHERRAY
EGDEAGEAETESSTPAASTANTDIIPKPVIVVTPPDSKSPTTAYHTTLQINDFPQQARYR
ASSNTSVSRVIANTGCSITAKGEYYPPGRIPGPKDEPKLFILIEGTSERAVKLAHHELSE
LLVSGLVKGARYQV*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG