YALI0C04620g

Overview

Description weakly similar to uniprot|P39936 Saccharomyces cerevisiae YGL049C (ohnolog of YGR162W) TIF4632 mRNA cap- binding protein (eIF4F), 130K subunit
Locus type CDS
Locus tag YALI0C04620g

Location

Species Yarrowia lipolytica Positions 613928..617144
Strain CLIB 122 Strand Sense
Chromosome YALI0C Total length 3217 (nuc.)
Previous locus YALI0C04587g Next locus YALI0C04642r

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C04620g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Intronic regions.
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C04620gYALI0C04620g_mRNA-001YALI0C04620g_CDS-001

Nucleotide sequence

 

>YALI0C04620g
GGTGAGTGTAACTAAGGGTGAGTTATTCGAGACGGAGAGGGTGGAGGAGCTGACGGGAGG
TGGCGACCAGACCCTACACGGCCCTTTCTCGCCGGTATTTGTGTGTTGTTTTTGAGGTTG
CGAAATGGGGCCATCACGACGAGTTTGAACGGCATTTGAGGACATTTGGGCCACAATTTT
GGAAGCGGTAAGGGATCCAAATGCGCCAGACGGGTTGCCACAGGCGACAGTGACCATTAT
AGATCCTGATACAGCCGGTTTGTCAACTTCCCAAACTCATGATCCACGTATCACGACACT
CGACACGACACAACACACACACACAATCAACGCCATCCCAGACTGTACTAACGCAGAATG
TCTTACACCTATAACAACGGGGCTTATTCGCCTCGAAACAACCAGCCTGGAACGCCCAAC
CAGGGCCAACAACACATGGCCTACTCTCCCGCCGCCATGTACAACGGAGGCTACGGCTAC
GTGGACATGACCCAGATGCAGGGTCAGTACTACCCTCCCCAGGAGGGCATGTCCCCCGGC
GCCCAGTACGCCCAGCCCTACGGCTCTCCCCATCACACCCATTCGCCCCTGACCATCATG
GACCCCGTCACTCACAGACCCATTGTGACTCCCGGTAGCAACACCGGAACGCCCACGGGT
CCCAACGCCACTCTGGCTTCTCCCAAGCCTAACTCTCCGCGGGTTGCCCACCGACGAACC
GATTCGTCCAACCCTGCCGGCGACTCCATCAAGGCCAACTTCATGGCCCAGGTGCTTGCT
GCCAAAGCCAAAAAGGAGGCTGCTGAGAAGGGCACTGAGAAGAAGGAGGAGGTGAAGGAA
GAGAAGAAAGAGGAGCCCAAGCCTGAGACCAAGCCTGAGGAGGAGGTCAAGAAGGAAGAG
CCCAAGAAGGAAGAGCCCAAGAAGGAAGAGCCCAAGAAGGAAGAGCCCAAGAAGGAAGAG
CCCAAGGAGGATCAGAAAGAAGAGGTGAAGGAGGAGCTCAAGGAGACCCCCAAGGAGGAT
GCCAAGCCCGTGGAGGCTGAGAAGCCCAAGGAGGATGTTAAGGAAGAGGCTAAGCCCGTT
GAGGCCGAGAAGCCCGCCGAGACTAAGCTTGAGGAGGAGTCTTCCGCCCCTGCTCAGGAA
GAGAAGGTCGAGAAGAAGGTCGAGATTGTCGAGCCTCCCAAGGAGCCCTCCGCCGAGGGA
GAGCCCACCGAAGACGCCTCCGAGTCCACTCCTAATCCTGTCGAGAAGATCGCCGAGACT
ATGCGACTCAAGAAGCGATTCGCTCACTCGTGGAACAATGCCACACCACTAACCGCCGAA
GAAATCACTACCAAGGTCACCTACCCCGAGTCCGTGACCAAGTCTCTCATGGAGGTGTCT
CCCGCCCCTACATTCCGATACAGCCTGGACTTCCTGCTGCAGTTCCAGCCTCTGGTTACC
GAGCAGCCCCCCAGTGGTCTGGAGGGTGCTAAGGCTATCACTGAGGATTGCAAGGGCTCC
AAGGCACCCCGAGCCTCCAGCCGAGGCTCTGGTGGTGGCCCCAACCAGCAGATGGGCTCC
TTCTCCAACTTTGGACGAGGAGGCCCCGGAGGACCCAGTGGACGAGGTATGCCCCGAATG
GGATCTTCTTCTAACATGCGAGGCGATCACGGTGGCCATCACCAGAGCCACCGAGGCGGC
GACCGAGGTGACCGAGAGGGCGGAGGACGATCCACTCGAAACAACAGCAGCAGAAACCGT
CGAAATCCCAGCAACAGAGAGCGATACCCTCCCCAGGGCGCCAACCAGGAGATCATTGAG
TACGTGCCTCCCCCTCCCAAGAGTGAGAACTCGTGGGCCGCCAAGCGATTGGCTGCCAAG
AAGGAAACTAGTACTCCTCCTCCTGCCGAGAGCGAGCCCGCTGAAGAAGAGACTCCCCGA
ATTCCTCCCGATGTGGTTCAGAAGAAGGTCAACTCCATGCTTAACAAGATGACGCTGGAG
AAGTTTGACAAGATTTCGGACCAGATTCTGGAGATTGCATCCCAGTCCAAGCACGAGCAC
GACGGCCGAACGCTGCGTCAGGTGCTTGAGCTCACGTTCGCCAAGGCCACCGATGAGGCT
CACTGGGCGTCCATGTACGCTCGGTTCTGCAAGAAGACTATGGTCACTGTTGATCCTGAT
ATTTATGATGACGACGTCAAGGACAAGAACGGCGAGTACGTGCGAGGTGGAGCTCTGTAC
CGAAAGTACCTGCTCAACAGATGCCAGGATGAGTTTGAGAAGGGATGGGAAGATAAGCTG
CCCACCAATGAGGATGGTTCTCCCATGGACCCCGATAACGCCACTCCCGAGTATGACAAG
GCCGTGGTTGCCAAGCGACGAGGCCTTGGTCTCATGGTGTTCATCGGTGAGCTGTTTATG
CTTAACATGTTGTCCGAGAACATTATGCGAAGCTGTCTCACTCGACTCATTTCGCCCAAG
GATGGAGCCTCTGAGGAGACCATTGAGTCTCTGTGCAAGCTAACTTCTACCGTGGGTCTG
CGTATGGATCAGTCGCCCAACTCCAAGGAGTTCATGGACATGTTTTTCCAGCGACTTACC
GATACCAAGAACAGTGGCACTCTGCCGTCGCGTCTTAAGTTCAAGATTCTGGATCTTCTG
GAGATGCGAGCTGGCGGCTGGAAGCAGTCCAACGACCAGGGTCCGAAGACTATCTCCGAG
ATCCAGGACGAGGCTGCCGCAGCCAAGGAGAAGCAGCAGCAGCAGCAGGACCGAGACCGC
TCCCACCGAGGCGGAAACCGACGAAGCGGACACCCCATGGGTGGTCGATCCGAGTCGTAC
CGTGGCGGTAACGAGCGGGACCGAAACACAAACTCGCTCAACACTGGCGATCTTAAGCAG
TTTGGTAAGATCCGATCTGATTCTTCCAACACGTTTGGTCCTCCCTCGTCTATGATGGGT
CGGGGCGGCTCCAACGCGTCGCGAAACTCGTCCCAGACCTCGCTGCAGCAGCAGGGCCGA
CAGAACAGCTCTTCCCCGGGCATTCCTCTGTCCAAGGACTCGTCACGAGCATCTTCTAAG
CGTGGCAACATTTTCGAGCATCTGATGGGTGACGGAGAGGGAGAGGAGGAGAACTAGGGG
GAGAAGGAGACGACGAAGCATTGAGTGTAATTCAGCGACAGGCGGTCGTGTAGTAAAATT
ATATAGACAAAAATGCCCCAGGGCTGACGATTGACGA

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C04620g_CDS-001

Protein length: 920 aa.
Product: Conserved hypothetical protein

>YALI0C04620g_CDS-001 MSYTYNNGAYSPRNNQPGTPNQGQQHMAYSPAAMYNGGYGYVDMTQMQGQYYPPQEGMSP
GAQYAQPYGSPHHTHSPLTIMDPVTHRPIVTPGSNTGTPTGPNATLASPKPNSPRVAHRR
TDSSNPAGDSIKANFMAQVLAAKAKKEAAEKGTEKKEEVKEEKKEEPKPETKPEEEVKKE
EPKKEEPKKEEPKKEEPKKEEPKEDQKEEVKEELKETPKEDAKPVEAEKPKEDVKEEAKP
VEAEKPAETKLEEESSAPAQEEKVEKKVEIVEPPKEPSAEGEPTEDASESTPNPVEKIAE
TMRLKKRFAHSWNNATPLTAEEITTKVTYPESVTKSLMEVSPAPTFRYSLDFLLQFQPLV
TEQPPSGLEGAKAITEDCKGSKAPRASSRGSGGGPNQQMGSFSNFGRGGPGGPSGRGMPR
MGSSSNMRGDHGGHHQSHRGGDRGDREGGGRSTRNNSSRNRRNPSNRERYPPQGANQEII
EYVPPPPKSENSWAAKRLAAKKETSTPPPAESEPAEEETPRIPPDVVQKKVNSMLNKMTL
EKFDKISDQILEIASQSKHEHDGRTLRQVLELTFAKATDEAHWASMYARFCKKTMVTVDP
DIYDDDVKDKNGEYVRGGALYRKYLLNRCQDEFEKGWEDKLPTNEDGSPMDPDNATPEYD
KAVVAKRRGLGLMVFIGELFMLNMLSENIMRSCLTRLISPKDGASEETIESLCKLTSTVG
LRMDQSPNSKEFMDMFFQRLTDTKNSGTLPSRLKFKILDLLEMRAGGWKQSNDQGPKTIS
EIQDEAAAAKEKQQQQQDRDRSHRGGNRRSGHPMGGRSESYRGGNERDRNTNSLNTGDLK
QFGKIRSDSSNTFGPPSSMMGRGGSNASRNSSQTSLQQQGRQNSSSPGIPLSKDSSRASS
KRGNIFEHLMGDGEGEEEN*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG