YALI0C03850g

Overview

Description weakly similar to uniprot|P14907 Saccharomyces cerevisiae YJL041W NSP1 Essential component of the nuclear pore complex, which mediates nuclear import and export
Locus type CDS
Locus tag YALI0C03850g

Location

Species Yarrowia lipolytica Positions 511005..513007
Strain CLIB 122 Strand Antisense
Chromosome YALI0C Total length 2003 (nuc.)
Previous locus YALI0C03828g Next locus YALI0C03872g

Structure and hierarchy

Here is a representation of the structure of the locus YALI0C03850g oriented from its 5' end (left) to its 3' end (right). In accordance with the decomposition of feature levels, this locus consists of :

  • The whole locus region.
  • Transcribed regions (translated part).
  • Transcribed regions (untranslated part).
  • Coding regions (CDS).

By clicking on the different fragments, you can show/hide the nucleotide sequence that corresponds to the selected region/feature.


YALI0C03850gYALI0C03850g_mRNA-001YALI0C03850g_CDS-001

Nucleotide sequence

 

>YALI0C03850g
ATGTCCAAGAGAAAGGTCTTGCCCTTGCCCAAGAGACGAGGCAACGGAAGCAGTGGATCT
ACTCCTAAGGCTTCCAATGGCTTTTCTGGACTGTCCAGCTTCGGTTCTGGAGCTTCTCCT
GCGCCCCAGATGTCGTTCTCTTCTCCTAGCACTACCGGGGGGTTTACCAATACCAACACT
ACCAACAATGATTCAACATCAGATACTACATTGAAGCGTATTGCAATGAACGAGAAGTTC
GTGGACACTATTTTCGCCAAGGTACGGGAGAATGCCGCAGTTGATTTGTCTGATGTCGTG
AGCAAGTATCTCGAGTACTCTAAGACACTTGGAGGTGACCATGCAAACGTTGCTAACAGC
ACTACCAGCACCACCAGCACAATTTCTGCGCCTGTTACTACAGCCACACCGACTCCTGCT
TCTGCCGACAAGCCCAAATCGTCGCTTTTCTCGTTTGGAGCTACTAAGAACTTTTCCGCT
GCCAACACAGACACTGAGAAAAAGGACACTACCTCCACCAGCACTTTTACATCATCACCC
TCCTTCAACTTTGGAGCTGGGGCAGCCGCAAAGCCCGCAGTGTCGAAACCATTCTCTTTC
GGTACATCTAGTGATACCAAGGAGGATAAGCCTGCTGTAACTACTCCCTCTTTTGGTTTC
CCTAAGGCTGACACTACTAAGGAGACAGACGCCAAGGACACCACCACTGCTGCCAAGCCC
TTTACATTTGGATCTTCTACTCCTTCTGGACCTTCTTTCAGTTTTAACAAGTCTGGAGCT
GATGTTGCCAAAGAGAAGACTGCTCCTTCTTTTTCGTTCACAGCTAAGAAGCCCGAAGAA
AAGAAGGAAGAGAAGAAGCCTGAGCCCGTTTCTGTGGACTCCGATTCCGACTCTGACGAC
GATGCCATTGACATCACCAAGGGCCCCAGTTTTACTTTAGCTGCACCTCCCACTACCACA
AACTCTGCTTTCTCTTTCAGCAAGCCTCAGAGCGAGGTGAAGAGCACAGGTCCTTCGTTC
ACCTTTGATAAGAAGGTTTCCAGCGGTCCTTTCAATTTCAAGTCCGAGACCAAGACTGAG
GAGAAGAAGGAGGATAAGCCGGAGGAGAAGAAGGAAGACAAGTCCGAAAACAAGAAGGAC
TTCACCTGGAATCCCTCTCAGGGAGTTGTTTTCGGCAGCAACAAGACCGAAGAGTCTGCC
GACAAACCCGCATTTTCGTTTGGAAGTACTTCTTCGGCAAAGCCTTTTACTTTTGGCGCT
AAGGCTGATGATGCTGAAGACAAGCCCAAGCCTGCTTTCTCGTTTGGATCTAAGTCCGCC
GAGTCATCTGACAAGCCTGCCTTCTCATTCGGAGCCAAGCCCGCTGAGTCAGCCTCTTCG
GACAAGCCTTCTTTCTCTTTCGGCACCCCTGCATTTGGTGCTAAGACTGAGTCTTCCTCT
GACAAGCCTGCATTCGGTGTTTCTTCCGGTAACCTGTTCAAGGGTGATACCAAGGGGGAG
ACTAAGCCTGCTGCTGCTTCTTCCACCGAGTCCGGTGAACCAGATGACACCCCCAAGACC
GTCACAGACTCGGATGACCTGTCAGGACAAGGACCAGGTGAGGAGAACGAAGACAATGTC
GCCGAGTACCGAACCAAGCTGTACAAGCTGGATGACGGAAAGTGGGACGTGTGTGGAGTG
GGTCAGCTGAGAGTGCTGGTGGACAAGGACACAAAGAAGGCCCGAATTTTGATGCGAGCA
GAACAGAGTGGACGAGTGCTTCTCAACTGTGTGGTTCGAAAGGAGTTGACGTACTCGACG
ACAAAGTCGAACGTGAACATTGTCGATTTCGACGCGGACTCGAAGCCAATCAAGTACATG
GCCCGAATTAAGACTGCTCCTGAAGCTGAGCAGTTGTCAGCTAAGATTGAGGAGGTGAAG
TAAGGAGAGGGGTTGACATGAGGTGATGTAATTGAATACGTTGTAACATATCCCATGATT
AGTAAATGCATGGAGGAGGGTAT

Legend

Locus sequence
Up/downstream sequence

Edit sequence


Translation(s)

YALI0C03850g_CDS-001

Protein length: 641 aa.
Product: Conserved hypothetical protein

>YALI0C03850g_CDS-001 MSKRKVLPLPKRRGNGSSGSTPKASNGFSGLSSFGSGASPAPQMSFSSPSTTGGFTNTNT
TNNDSTSDTTLKRIAMNEKFVDTIFAKVRENAAVDLSDVVSKYLEYSKTLGGDHANVANS
TTSTTSTISAPVTTATPTPASADKPKSSLFSFGATKNFSAANTDTEKKDTTSTSTFTSSP
SFNFGAGAAAKPAVSKPFSFGTSSDTKEDKPAVTTPSFGFPKADTTKETDAKDTTTAAKP
FTFGSSTPSGPSFSFNKSGADVAKEKTAPSFSFTAKKPEEKKEEKKPEPVSVDSDSDSDD
DAIDITKGPSFTLAAPPTTTNSAFSFSKPQSEVKSTGPSFTFDKKVSSGPFNFKSETKTE
EKKEDKPEEKKEDKSENKKDFTWNPSQGVVFGSNKTEESADKPAFSFGSTSSAKPFTFGA
KADDAEDKPKPAFSFGSKSAESSDKPAFSFGAKPAESASSDKPSFSFGTPAFGAKTESSS
DKPAFGVSSGNLFKGDTKGETKPAAASSTESGEPDDTPKTVTDSDDLSGQGPGEENEDNV
AEYRTKLYKLDDGKWDVCGVGQLRVLVDKDTKKARILMRAEQSGRVLLNCVVRKELTYST
TKSNVNIVDFDADSKPIKYMARIKTAPEAEQLSAKIEEVK*


Neighborhood

Browse the locus neighborhood with JBrowse:


References

There are no reference.

ATG